Roseiflexus castenholzii: Rcas_0338
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Entry
Rcas_0338 CDS
T00585
Name
(GenBank) transcriptional regulator, putative ATPase, winged helix family
Organism
rca
Roseiflexus castenholzii
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_16
BTAD
Trans_reg_C
AAA_22
TPR_12
NB-ARC
TPR_10
BrxC_BrxD
AAA_35
ABC_tran
ATPase_2
NACHT
Motif
Other DBs
NCBI-ProteinID:
ABU56470
UniProt:
A7NG83
LinkDB
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Position
complement(417185..420766)
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AA seq
1193 aa
AA seq
DB search
MEKSLRIELFGTLTVLVDGHPVPDSAWRSRQERRLLAILAAARGRLIAADRLYEWLWPGS
DHASAAVNLRSAISSLRRLLEPEADRASHRYILTRSGGYAWNMESGAWIDVDAFLSLTEP
TGTDDSVAAKREAERLERAVALYRGDFLEEEQDLAWVIMERERLRARYLDALRRLAEIKL
DRGDPTAAMALAGRGIAVASLAEPLWRILMLAQARAGDTAGALQSYERYRHLLDHELGAV
PSPQTQALHMAILRGDLGVERRIGSPPLQGDHNERLRSTDVRSAGGPLQAIRLPRSASTP
IVGRQEELALLRRWLADLDQRTGGIVTIVGEAGIGKTRLLTETLRIAADRGALTLELRAT
SLDQGLPFAAVSEVLRSLVRNAPEQRLRRLPQFALAQIADLFPALRERLPDLPALPDVPP
DERRTRQIEGLCELALDLAHTLPLVIALDDAQWADEATLATIGRLARQSSRRSLLIMLAY
RADELSDNPSLHRLLRTLGRDMLLRPLVLNRLDAAAVAELLATLAGVETGRVARLAPQLA
ISTGGNPLAIMVTVQALLESRGAASLAALLPDLEAGAPFPDPTEAPQMRELVRTRLDRLP
ATARNLAEHLALINRPASLDMIERLGGTDALEAAQILLERQILVEDDDAHLAFNHDLVRS
ITAATLSSPRRRLLHHRIGEAMAALEGHLPERAAEIAYHFRQAGRTADRETLRYATDAGD
HARRAFGYRDALRHYDAALEAGERLGDEAPVEVMQRAFAGRLLTCETLLDWHGLEETSAR
YERWAMQRSVTPPTLVAPRRLVLLRALMGDLAGAAAISAAHTARAQKGGCVEPLPSIADM
LQRTALILQPDTLSVVSERSRGEARKRRMGIGDRRSLGADIVSRETVESEIQSADLRSMR
DADAAWHAFPSFMLAHPVPGNPAEELPELLGADEAAAALFQIGWAALMQGLLRSARPCLI
RSYALAVETGQAPAAVVSALQLAHLNALTGKPDETAIWLERSLETSARASEAAWASIWPR
IHQGFLWLIDDRLAQAEERFVDMAARLAGAPAFQSHRASIAVGMGMIALARGDLTGADSY
FHEALRASQQLYGFIYVSAHHGLARLAALRNDLPRARDVLLHALRYSAQRALLPEYVRTV
IEVARIERDFGDPIPVLPYLRIAVRLARDAGLAPLASAASALSTRLEESHRVP
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atggagaaatcgctcaggattgaactgttcggcacgctcaccgtcctggtcgatggtcat
cccgtgccggactccgcctggcgttcccggcaggagcggcgtctgctcgccatactcgcc
gcagcgcggggacggcttatcgctgccgaccggctgtatgagtggttatggcccggttca
gatcatgccagcgcagcggtaaacctgcgcagcgccatcagcagtcttcgtcgccttctc
gaaccagaagccgaccgcgcctcacaccgctacattctgacccgttccggcgggtatgcc
tggaatatggagagtggcgcgtggattgatgttgatgcgtttctctcgttaacagaaccg
accggaaccgacgatagtgttgccgcaaagcgcgaagcggaacgcctggaacgcgccgtt
gcgctctaccgcggcgattttctcgaagaggagcaggatcttgcgtgggtcattatggag
cgtgagcgtctgcgcgcgcgctatctcgatgcattgcgacgacttgcggagattaaactc
gatcgcggtgatccaacagcggcaatggcgctggccgggcgcggcattgccgtggcttcg
cttgccgaaccgctctggcggatattgatgctggcgcaggcgcgcgcgggcgacacggcg
ggtgcgcttcagagttatgaacggtaccggcatctcctggatcacgaactgggggccgtg
ccgtcccctcagacacaggcgctccacatggcgatcctgcgcggcgatctcggagtcgaa
cggcgaatcggcagtcctccattgcagggagatcacaacgagcggctgcgctcaaccgac
gtgcgcagtgccggcggtcctctccaggcaatacgtctgccacggtcggcatcgacgcca
attgttgggcgacaggaggaactggcattgctccgacgctggctcgccgatctcgatcag
cgcaccggcgggattgtcacgatcgttggcgaagcaggaatcgggaaaacgcgcctgctg
acggaaacgttgcgcattgccgccgaccgtggcgctctgacgctcgaactgcgcgcgacc
tcattggatcaggggttgccctttgcagcggtgagtgaggtgttgcgttcactggtgcgc
aacgcgccagaacagcgcctgcgccggttgccgcagtttgcgctggcgcagattgccgat
ctctttccggcgctgcgcgaacggttgccagacctgccagcgttgccggatgtcccgccg
gatgagcgtcgcactcgtcagatcgaaggcttatgcgaactggcgctcgacctggcgcac
accctgccgctggtgatcgcgctcgatgatgcacagtgggcggatgaagccacactggcg
accattggacgtcttgcccgccagtcatcgcgccgatcattactgatcatgctggcatac
cgtgctgacgaactcagtgataatccgtcgctccaccgcctgctccgcacacttggacgc
gatatgctattgcgcccgctggtgctcaaccgtcttgacgccgccgcagtggcggaactt
ctcgccacgcttgccggagtcgaaaccggacgggtcgcacgtctggcgcctcaacttgcg
atcagcaccggcggcaatcctctggcgattatggtgaccgtccaggcgctgctggagagt
cgcggcgcagcgtcacttgctgctttgctgcccgatctcgaagccggtgcgccattcccc
gatccgaccgaagcgccgcagatgcgtgaactggtgcgcacgcgccttgaccgtctgcct
gcaactgcgcgtaacctggcagaacatctggctttgatcaaccgccccgcgtcactcgac
atgattgaacgacttggcggtaccgacgcgctcgaagccgcgcaaatcctgctcgaacgc
cagatactggttgaagatgacgatgcgcaccttgcgttcaaccacgatctggtgcgttcg
atcacggcagcaacgctctcgtcgccgcgacggcgtctgctccatcatcggatcggcgaa
gcgatggcggcgctggaagggcatctgccggaacgcgccgccgagatcgcctatcacttt
cgacaggcgggccgtaccgctgatcgtgaaacgctgcggtatgcaactgatgctggcgac
catgcgcgtcgcgcattcggctatcgtgatgcattgcgccactacgacgccgctcttgag
gcgggcgagcgcctcggcgacgaagcgccggtcgaggtgatgcagcgcgccttcgccgga
cggttgctgacgtgcgagacgctgctggactggcatgggctggaggaaacatcggcgcgc
tatgagcgctgggcgatgcagcgcagtgtgacgccgccaacgctcgttgcgccgcgtcgg
ttggtgttgctgcgcgcgctgatgggcgatctggcaggcgctgccgcgatcagcgcggcg
catacggcgcgcgcgcaaaaaggcggttgtgttgaaccgctgccttcgattgccgacatg
cttcagcgcacggcactgatcctacagcctgatacgctttctgtcgtctccgagcgctcg
cgtggggaagcgcgcaagcgtcggatggggattggcgatcggcgctctttaggggcggat
attgtttcacgtgaaacagttgaatcagaaatccagtctgccgatctccgttcgatgcgt
gatgctgatgcggcatggcatgcgtttccatcgttcatgctcgctcatcctgttccaggt
aatccggcggaagaactgcctgaacttctcggagcggacgaagcggcagcggcgttgttc
cagataggatgggcagcgcttatgcagggattgctgcgcagcgcgcgcccgtgcctgatc
cgatcatacgcgctggcggtcgaaaccggtcaggcgccggcagccgttgtctcggcgctg
caactggcgcacctgaatgcgcttacaggcaaacccgacgaaacggcgatctggctggaa
cggagtctggagacttcggcacgtgcatccgaagctgcatgggcgtcgatctggccccgc
atccatcagggttttctctggctcatcgatgatcgcctggcgcaagcggaagagcgtttt
gtcgatatggcggcgcgtcttgccggtgcaccggcatttcagtcacaccgcgccagtatt
gccgtcggcatggggatgatcgcgctggcgcgcggcgacctgacaggcgcggactcttat
tttcacgaggcgctgcgcgcgtcgcagcagttgtatggttttatctatgtgagcgcgcat
catggtctggcgcgtcttgcggcgttgcgcaacgacttgccgcgcgcccgtgacgtgttg
ttgcacgcgctgcgctacagcgctcagcgggcgctgctgccggagtatgtccgtaccgtt
atcgaggtggcgcgtattgagcgcgactttggcgatcctatccccgttcttccttatttg
cgcattgctgtccgtcttgcgcgtgacgccggacttgcgccgcttgcatcagccgcctct
gccttgtctacccgtcttgaggagagtcaccgtgtcccctga
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