Roseiflexus castenholzii: Rcas_0572
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Entry
Rcas_0572 CDS
T00585
Name
(GenBank) excinuclease ABC, A subunit
KO
K03701
excinuclease ABC subunit A
Organism
rca
Roseiflexus castenholzii
Pathway
rca03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Rcas_0572
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rca03400
]
Rcas_0572
DNA repair and recombination proteins [BR:
rca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Rcas_0572
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Rcas_0572
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
AAA_21
AAA_16
SMC_N
nSTAND1
AAA_29
RsgA_GTPase
nSTAND3
DnaJ_CXXCXGXG
DUF4350
SLATT_1
Motif
Other DBs
NCBI-ProteinID:
ABU56701
UniProt:
A7NGV4
LinkDB
All DBs
Position
763756..766686
Genome browser
AA seq
976 aa
AA seq
DB search
MSADWIVVRGARVHNLKNITVAMPRNALVVITGLSGSGKSSLAFDTIFAEGQRRYVESLS
VYARQFLGQIDKPDVDAIEGLSPAIAIDQKGLVRNPRSTVGTVTEIYDYLRLLFARIGRP
HCVHCGRPLIRQSAQQMIDTILDLPPGSRILLLAPLVRDQKGDHQPLLDQVRKQGFVRVR
VDGEVRDLADDLRLDRYRPHTIEVVVDRLVIPQSDTAPHQSQLRVRVADSVEMALRVGDG
VVIVQIVGGDELPLSQRYACPVHGPATIGALEPRDFSFNNPSGACATCDGLGSVLEFDPD
LVIPDRSRSLADGAIAPWANVSRAQRRYFDDLLASLADHLGFSPHTPLRDLPPEVIATIL
YGSNGDVMPLRYRLRGEERLVEAPFEGVIPALRRRLGECSDETERAQIEQFMTPCVCPAC
NGARLRPELLAVTVAGYTIAQVSALPVAEAWSWAKTLAADVAAAVSCWRETRESNLRSSI
YALNVRECQIAAPILNDICARLRFLNEVGLEYLALDRAAATLSGGEAQRIRLATQIGSGL
SGALYVLDEPSIGLHPRDTARLLNTLRRLRDLGNSVLIVEHDEEIIRAADWIVDIGPGAG
ERGGEVIVSGPFEAVLAEPRSLTGQYLSGKRAIPVPRRRRSGSGRFLMIKGAREHNLKHI
DVAIPLGCLVAITGVSGSGKSTLVNDTLYPRLAQALHGARARPGAHDAIYGIEHIDKVID
IDQSPIGRTPRSNPVTYTKAFDPIRKLFAQTPEARARGYDAGRFSFNIPGGRCEHCNGEG
LMQIEMQFLPDLYVTCDVCHGARYNRETLDIRYRGKNIAQVLDMTAEEAAAFFERVPAIA
EKLQTLIDVGLGYIRLGQPATTLSGGEAQRIKLATELSRRATGRTLYILDEPTTGLHVAD
VDRLLRVLQRLVDAGNTVLVIEHNLDVIKCADWVIDLGPEGGDAGGRVVAAGTPEQVART
PGSHTGQCLARILVER
NT seq
2931 nt
NT seq
+upstream
nt +downstream
nt
atgtcggctgactggatcgtggtgcgcggagcgcgcgtccacaatcttaagaatatcacg
gtcgccatgccgcgcaatgcgctggtggtgatcacgggcctctccggctccggtaagtcg
tcgctggcattcgacaccatttttgccgaggggcagcgtcgctatgtcgagtcgctctcc
gtctatgcgcgccagttcctcggtcagatcgataagccggatgtcgatgcgattgaaggg
ttgtcgcctgcgattgccatcgaccagaagggtttggtgcgcaatccgcgctcgacggtc
ggcacggtcaccgaaatttacgattaccttcgcttgctcttcgcccggattggacgaccg
cactgcgttcactgcggtcgtccgttgatccgccagtcggcgcagcagatgatcgatacg
atcctcgatctgcctcccggcagtcgcattctgctgctggcgccgctcgtgcgcgatcag
aagggcgaccatcagccgctcctcgatcaggtgcgcaaacaggggtttgtgcgcgtgcgc
gtcgatggcgaggtgcgcgacctggcggacgatctgcgcctggatcgctaccgcccccat
accatcgaggtggtcgttgatcgtctggtcataccgcaatccgatacagcgccgcatcaa
tcccagttgcgggtgcgcgtcgccgattcggtcgaaatggcgctgcgggttggtgatggg
gtggtgatcgtgcagatcgttggcggcgatgaactgcccctctcgcaacggtatgcctgc
ccggtgcatggtcctgcaacgattggggcgctcgaaccgcgcgatttttcgttcaataat
ccgtccggcgcctgcgcgacgtgcgacggtctcggcagtgtgctggagttcgatcccgat
ctggtcattccagaccgctcacgttcgctggcggacggcgccatcgcgccatgggcgaat
gtcagtcgcgcacagcgccgctacttcgacgatctgctggcatcgctcgccgatcacctg
ggtttttcgccgcacacgccgctgcgcgatcttcctcccgaagtgattgcgacaatcctc
tacggctctaacggtgatgtgatgccgttgcgctaccggctgcgcggcgaggagcgtctc
gtcgaggcgccattcgagggcgtaattccggcgttgcgccgacggctgggggagtgctcc
gatgaaacggaacgcgcgcagatcgagcagttcatgacgccgtgcgtgtgtccggcatgc
aacggcgcgcgcctgcgccccgaattgctcgccgtcaccgtcgccggatacacgattgcg
caggtgtcggcgctgcccgtcgctgaagcatggtcgtgggcgaaaacgctggctgccgac
gtcgcagcggccgtctcctgctggcgcgagacgcgcgaaagcaatctgcgctcgtcaatc
tatgcgctgaatgtgcgcgaatgtcagattgcagcgcccatcctgaacgacatctgcgcg
cggctccgattcctgaacgaggttgggctggagtatctcgcgctggatcgcgccgccgcg
accctctccggcggagaagcgcagcgtatccgccttgcgacacagatcgggtccgggttg
agcggcgcgctctacgtgctggacgagccgagcattgggctccacccgcgtgatacggcg
cgcctgctcaatacgctgcgacggctgcgcgacctggggaatagtgtgctgatcgtcgaa
cacgacgaggaaatcatccgcgccgccgactggatcgtcgatattggtcctggcgcaggg
gagcgcggcggcgaggtgatcgtcagcggaccgttcgaggcagtgctggcagagccgcgc
tcgctaaccgggcagtatctctccggcaaacgcgcgattcctgtgccgcgccgacggcgc
tccggcagcggcaggtttttgatgatcaaaggggcgcgtgagcacaatctgaagcatatc
gatgtcgccattccactaggatgcctggttgccatcaccggtgtcagcggctccggtaaa
tccaccctggtcaacgacaccctctacccgcgactggcgcaggcgctccatggcgcgcgc
gcgcgccccggcgcccacgacgcgatctacggcattgaacatatcgataaggtgatcgac
atcgaccagtcgccgatcggtcgcacgccgcgttccaatccggtcacctacaccaaagcc
tttgacccgatccgcaagttgtttgcgcaaacccccgaagcgcgcgcgcgcggctatgac
gccggtcgtttttcgttcaacattcccggcgggcgctgcgaacattgcaacggcgaaggg
ttgatgcagatcgagatgcagttcctgccggacctctacgtgacctgcgatgtgtgccat
ggcgcgcgctacaaccgtgagacgcttgacatccgctatcgcggcaaaaatattgctcag
gtgctcgatatgaccgctgaggaagcggcggcgttcttcgagcgcgtgcctgccattgcc
gaaaaattgcagacgttgatcgacgtggggttgggctacattcgcctcggtcaaccggca
accacgctgtccggcggcgaagcgcagcgcatcaaactggcgactgaactgagccgccgc
gccaccggacgcaccctctacatcctggacgagccaaccaccggattacacgtcgccgac
gtcgaccggctgctgcgtgtgttgcagcggttggtcgatgcgggcaacactgtgctggtc
attgaacataacctcgacgttatcaagtgcgccgactgggtcatcgaccttggtcccgaa
ggcggcgatgctggcgggcgcgtcgtcgccgccggaactcccgaacaggtggcgcgaacg
ccaggatcgcacaccggtcagtgtctggcgcgcatactcgttgaacgttga
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