Roseiflexus castenholzii: Rcas_0929
Help
Entry
Rcas_0929 CDS
T00585
Name
(GenBank) Cna B domain protein
KO
K20276
large repetitive protein
Organism
rca
Roseiflexus castenholzii
Pathway
rca02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
rca00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
Rcas_0929
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SdrD_B
CarboxypepD_reg
SpaA
CARDB
bMG3
Motif
Other DBs
NCBI-ProteinID:
ABU57043
UniProt:
A7NHU6
LinkDB
All DBs
Position
1226041..1234671
Genome browser
AA seq
2876 aa
AA seq
DB search
MATTHTSHRARRLHMRRWAVISAAALMLSTLLAFFGARVASAVGDLTVRVYADSNRNGQY
DGGEPAVSGVPVSVFNTDNNLLYSVNTNASGLAIFPNTPNGDYRVEVTNPNNGLPNGTVV
SVPGPTTPGQDNALVFFVNINNAPVQRDVGLRSLDASGIDAGAPAGFRTIVVRAWDDQDA
NGIQDAGEPGLSGLTLGLYTPSNVLVATATAGPDGTYRFVDNVPAGVSNYTIRVTGGIPA
GWVLTTPNANFDSEDRRDSDAQLVVGEPRITVPNAARGVNDDSLDVGFARGAVSGFVWRD
LDQNGLRDPGEPFINGVEVELRDSSDNLIDTQTTRSILNDPANRAGFFEFVSVPLTATYR
VRIPNDEFNAATDPLYGHATPPNQTATPPAIGDQGLINGTTDGPAVIGASDFLQTPNFTL
DATNRRNETSNFGLYAGTVGDFVWHDVNRNGSVDPLETTLGLANALVFVDLDSDCQIDTG
EPQMTTDLYGNYRFDSLPLGITYTVVLDASNFAPGGALEGLGYTTGAPCGSTEGVVITTT
LLTASQPTDFTVDFGIVRAEIGNFVWEDDNGNGIFDLSETGIQSVTVQLYGAGPDNTFFT
VDDVTIGLSQTTNASGIYTITDILSGTYYATFDLSALPPAYVASIVTPTGWLSVDPPASS
SDDVNDVRALVSGRVWRTPTFTIARGSQNPGVDAAVYRPASLSGRVFFDQNGNNQDETSP
EPGLSNFTVNLLRAADNTLMMTTTTLADGSYAFSSVAPLTYVVEIVRPDPSNWSFVAPDN
PSAGDPLASDVDANGRTSVLTVTSGITVTDVDAGLRGNNIVQGYVFFDRDGSFTQTANDQ
ALNSATATLTVTVATVNLTTTYTLTATTTGSDPNYSFAGLPGGTAGVTYTLAFAPPDGTY
TASLADVGGNDALDSDGPFIAVTGATVGVSNTLDYDQGYWRPVTVRARIFDEITALPPDN
VYNVGDTGITTATVTITTTNGAVTPLGSSGIDSTGVVTFTLPPTTTTYWLNVPTPAGFTP
SPGNTGALEVNTPSPLLADNTAPSPTTEFQFGYFRPGAVTGAVRFDRDADNNLFGDSEPG
MQGVTVTLRLGGSDVLTTTTDATGAYTFTNVAPANGYSVWVINPDTANFLLVTPTGGDND
MQSTDGGNTYAETNPFTVTSGAVVSGSSDAAVRGRSTVNGAVWEDLNGNGVRDGGEGVGA
LPGVTVNLTVTVNLPGLLSTQIVTTTTTDASGAYTVTNLPGWASVSSEVSFTLRFATPTG
WYETLADVGTQPATDDSDGIGAGVDQLDDQGLQRNTTATRDRGYYQGVTVVARVFEENPP
VDNAFATGDTGITTATVTITTTNGTVTPLSVTPIDASGLITFTLVPTDSATPYWVNVAPI
SGFTRSPGNTGAAQVTPNPTSGQTVGPTNLEFGHYRPVTVVVRVFEEVNPPVDNAFATGD
TGITTATVTITTTNGTVTPLSVTPIDASGLITFTLVPTDSATPYWVNVAPISGFTRSPGN
TGAAQVIPNPTSGQTVGPTNLEFGHYRPVTVVARVFEEVNLPVDNAFATGDTGITTATVT
ITTTNGTVTPLSVTPIDASGLITFTLVPTDSATPYWVNVAPISGFTRSPGNTGAAQVIPN
PTSGQTVGPTNLEFGHYRPVTVVARVFEEVNLPVDNAFATGDTGITTATVTITTTNGTVT
PLSVTPIDASGLITFTLVPTDSATPYWVNVAPISGFTRSPGNTGAAQVIPNPTSGQTVGP
SGLEFGHYRPVTVVARVFEENPPVDNVFATGDTGITTATVAITTTNGTVTPLSVTPIDAS
GLITFTLVPTDSATPYWVNVTTPAGFTPSPGNTGAAQVTPNPGPGGTVGPTNLEFGYYRP
GAVTGAVRFDRDADNNLFGDSEPGMQGVTVTLRLGGSDVLTTTTDATGAYTFTNVAPANG
YSVRVINPDTANFLLVTPTGGDNDMQSTDGGNTYAETNPFTVTSGAVVSGSSDAAVRGRS
TVNGAVWEDLNGNGVRDGGEGVGALPGVTVNLTVTVNLPGLLSTQIVTTTTTDASGAYTV
TNLPGWASVSSEVSFTLRFATPTGWYETLADVGPQPANNDSDGIGAGADQLDDQGLQRNT
TATRDRGYYRPVVIQVRVFEETTSPIDNAYAAGDAPVPGATVALTPNVTLGGPFGPDATG
IISYTVAPTTTAYTVGVTPPTGYVASPGNTGTATAPAPLTSGQSIMPLPFGYYRNGVISG
TVWFDTNSNGLFDSGEPTMAGVTVTLTLDPDTTVNGNETSIGTFTTGDNGIYQFTAITPT
GALTSGTLYRVQFALPAGYAFTAQGAPVTTDNNSDASTVNGYTDRFTVGSNETVTYVDAG
AVGNLSLSGTTWEDIDADGVFDAGESPLSGVTLTLTVTSSINSTNPVVTYTVTSGAGSPN
FTFNQLPAGNYQLSVTGRPLGYLLSTTGTLSGTLPATGQNFGLYRTASVGDRVWLDVNGN
GAYEAGVDAGVPGIAVRLRDAATDTVISTTTTLASGDVGFYGFENVTPGSYVVEFVVPTG
FQTVNNGTGSLSVDNDNDAQNNGRTASFTLASSQISTTVDAGLIGSGSISGIAWVDENFN
DVRDPGETQRIAGVAVTLTITPTGLGAPLTFNAVTATNGSYAFGNLPPGTFVLTFTKPAG
YFDIATRVGSDPTIDSDAPVATGTLGAGQSITTLDAGYRMQTRVFLPLIAVPVTPPDLVV
EEFTVTPAKTSYAAGEPVLITVKVKNVGGSPTTIGFWVDLYINPSVAPTTPNVRWNDVCG
ISPCYGIAWYVNQSLAPGQSITLTSAPGQFAGPQSVWPGSFAGGTNTLYVYVDSYNPPVP
TGAVVESNETNNRAQITGFVVTGASLSNGAGPGTPSSTPDAPVALPPRQLPGPVER
NT seq
8631 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaacccacacctcacatcgtgctcgacgcctgcacatgcgccgttgggcagtg
atttccgctgccgctctgatgctctcgaccctgctcgccttttttggtgcgcgtgttgcg
agcgctgtcggcgacctgacggtgcgcgtctacgcggatagtaaccgcaatgggcagtac
gacggcggcgaacccgctgtgagcggtgtaccggtgtcggtgtttaacaccgacaacaat
ctgctctattcggtgaacacgaatgcctctggattggcaatctttcccaacactcccaac
ggcgattaccgcgtcgaggtgacgaaccccaacaatggtcttcccaacggcaccgttgtc
tccgtgccaggaccgacaacgccagggcaggacaatgctctggtgttttttgtgaatatc
aacaatgcgccggttcagcgcgatgtcggtctccggtcgctcgatgcgtccggcattgat
gccggcgctcctgctggattccgcaccatcgtcgtgcgcgcatgggacgatcaggacgcc
aatggcattcaggacgccggtgaacccggcttgagcgggctgacgctcggattgtacact
ccgtcgaatgtgctggtcgccactgcgaccgccggaccagatggcacgtaccgttttgtg
gacaatgtcccggcaggtgtcagcaactacactatccgcgtcaccggcggcattcctgcc
gggtgggtgctgacgacgcccaatgcgaacttcgacagtgaggatcggcgcgactccgat
gcgcaactcgttgtgggcgagccgcgcattaccgttcccaatgcagcgcgcggtgtgaat
gacgatagtctggacgtcggcttcgcgcgcggcgcggtgagcggcttcgtctggcgcgac
cttgaccagaacggtctgcgcgatccgggtgagccgttcatcaatggcgtggaggtcgaa
ttgcgtgactcatccgataatctcatcgatacgcagaccacgcgatccatcctcaacgat
cctgccaatcgcgccgggttctttgagttcgtgagtgtgccgctgacggcgacgtaccga
gtgcgcattccgaatgacgagttcaatgccgccaccgatccgctctatggtcatgcgacg
ccgcccaaccagacggcaaccccgcctgctatcggcgatcagggtcttatcaacggcaca
acggatggtcctgcggttatcggcgctagtgatttcctccaaacacccaactttaccctg
gatgcaaccaatcgtcgcaatgagacctcgaatttcggcctctacgccggcacggtcggc
gatttcgtctggcacgatgtgaaccgcaacgggagcgttgatccgctcgaaacaacgctc
ggattggcgaatgcgctggtctttgtggacctggatagcgactgtcagatcgacacaggc
gaaccacagatgaccaccgatctctacgggaactatcgctttgacagcctgcccctcggt
attacctacaccgtggttctcgacgcctccaacttcgcacccggcggcgcgctcgaaggg
cttggctacaccaccggcgctccctgcggttcaaccgagggggtggtgatcaccacaacg
ctcctcactgcaagtcagccgacggatttcactgttgacttcggcattgtgcgcgccgaa
atcggcaactttgtctgggaagatgacaatggcaacggcatcttcgatctgagtgaaacg
ggcattcagagcgtcaccgttcaactctacggcgccggacccgacaacacgttcttcact
gtcgatgatgtcaccatcggtctgtcgcagacgacgaacgccagcggcatctatactatt
accgacattctctccggaacgtactacgcgacgttcgatctgagcgcgctgccgccggcg
tatgtggcgagcattgtcacgccaaccggttggttgagcgttgatccgcctgccagcagt
tcagacgatgtcaatgatgtgcgcgcgttggtcagcgggcgcgtctggcgcacgccgacg
ttcacgattgcgcgcggtagtcagaatcccggcgtcgatgcggcggtctaccgaccggca
tccctctcagggcgcgtcttcttcgaccagaacggcaataaccaggatgaaacctcgcct
gagccggggctgtccaatttcaccgtcaatctgctccgcgccgccgataatacgctgatg
atgacaacgacgacccttgctgacggcagttatgccttcagcagcgtcgcgccgctcacc
tatgtggtcgaaatcgtgcgccccgatccgtccaactggtcattcgttgcgcccgacaat
ccttcagctggtgacccgctcgccagtgatgtcgatgcaaatgggcgcaccagcgttctg
acggtgacctcgggaatcactgtgaccgacgttgatgccggtttgcgcgggaacaacatt
gttcagggctacgttttcttcgaccgcgacggcagtttcacgcagactgccaatgatcag
gcgctgaatagcgcaaccgcgacgctaactgtgacggtcgctactgtcaatctgacgacg
acctacacactgactgccacaaccaccggcagtgatccaaactattcattcgccggtctc
cccggtgggacagcaggcgtgacctacacgctggcgttcgctccgccggatggtacgtac
accgcctcactcgccgatgtcggcggcaatgatgcgctggacagcgatggaccattcatc
gcggtgaccggcgcaacggttggcgtcagcaacacgctggactatgaccaggggtactgg
cgtccggtcaccgtgcgcgcccgcattttcgatgagatcacagccctgccgcccgacaac
gtctacaacgtgggcgacaccggcatcacgaccgccacggtcacaattacgaccaccaac
ggcgcggtgacgccgctcggcagcagcggaatcgattcgaccggcgtggtgaccttcacc
ctgccgccgaccacgacgacctactggctgaatgtgcccactcctgccgggtttacgcca
tcgccggggaacacgggcgcgctcgaagtcaatacgccaagcccgctgctcgccgataat
accgcgccatcgccaacgactgagtttcagttcggttatttccgccctggcgccgtgacc
ggcgcggtgcggttcgaccgcgacgcggacaacaacctgttcggcgacagcgagccgggg
atgcagggggtgacggtgacgctacggttgggcggcagcgatgtgctgacgaccacgacc
gacgcgactggcgcgtacaccttcacgaacgtggcgccagccaacggttactcggtgtgg
gtcatcaaccccgatacggcgaacttcctgctggtgacgccgacaggcggcgataacgac
atgcagagcaccgacggcggtaacacctacgccgaaaccaatccgttcaccgtcacatcg
ggcgcagtggtgagcgggtcgagcgacgcggcggtgcgcggacggtctaccgtgaacggc
gcggtgtgggaagacctgaacggcaacggcgtgcgcgacggcggcgagggggtcggcgcg
ctgccgggggtgacggtgaacctgacggtgacggtcaacctgccggggttgctgagcacg
cagattgtgacgacgaccacgacggacgccagcggcgcgtacacggtcacaaacctgccg
gggtgggcaagcgtcagcagcgaggtctcgttcacgctgcgctttgcgacgccgacgggg
tggtacgagacgctggcggacgtggggacgcaaccggcgaccgacgacagcgacgggatc
ggcgcaggcgtggatcaactcgacgaccagggattgcaacgcaacacgaccgcaacccgc
gaccgggggtactaccaaggagtgactgtcgtggcgcgggtctttgaggagaacccgccg
gttgataacgcctttgcaaccggcgacaccggcatcacgacggcgacggtgacgattacg
acgacgaacgggacggtcacgccgctgagcgtgacgccgattgacgcgagcgggttgatc
accttcacgctggtgccgaccgacagcgcgacgccgtactgggtgaatgtcgcgccgatc
agcgggttcacgcgctcgccggggaacaccggcgcggcgcaggtgactcccaacccgaca
tcagggcagacggtcggaccgaccaatctggagttcgggcactatcgcccggtcacggtg
gtggtgcgggtctttgaagaggtgaacccgccggtggataacgcctttgcaaccggcgac
accggcatcacgacggcgacggtgacgattacgacgacgaacgggacggtcacgccgctg
agcgtgacgccgattgacgcgagcgggttgatcaccttcacgctggtgccgaccgacagc
gcgacgccgtactgggtgaatgtcgcgccgatcagcgggttcacgcgctcgccggggaac
accggcgcggcgcaggtgattcccaacccgacatcagggcagacggtcggaccgaccaat
ctggagttcgggcactaccgcccggtcacggtggtggcgcgggtctttgaagaggtgaac
ctgccggtggataacgcctttgcaaccggcgacaccggcatcacgacggcgacggtgacg
attacgacgacgaacgggacggtcacgccgctgagcgtgacgccgattgacgcgagcggg
ttgatcaccttcacgctggtgccgaccgacagcgcgacgccgtactgggtgaatgtcgcg
ccgatcagcgggttcacgcgctcgccggggaacaccggcgcggcgcaggtgattcccaac
ccgacatcagggcagacggtcggaccgaccaatctggagttcgggcactaccgcccggtc
acggtggtggcgcgggtctttgaagaggtgaacctgccggtggataacgcctttgcaacc
ggcgacaccggcatcacgacggcgacggtgacgattacgacgacgaacgggacggtcacg
ccgctgagcgtgacgccgattgacgcgagcgggctgatcaccttcacgctggtgccgacc
gatagcgcgacgccgtactgggtgaatgtcgcgccgatcagcgggttcacgcgctcgccg
gggaacaccggcgcggcgcaggtgattcccaacccgacatcagggcagacggtcggaccg
tccgggctggagttcgggcactaccgcccggtcacggtggtggcgcgggtctttgaggag
aacccgccggtggataacgtctttgcaaccggcgacaccggcatcacgacggcgacggtg
gcgattacgacgacgaacgggacggtcacgccgctgagcgtgacgccgattgacgcgagc
gggttgatcaccttcacgctggtgccgaccgacagcgcgacgccgtactgggtgaacgtc
accacccctgccggatttacgccatcgccggggaacaccggcgcggcgcaggtgacgccg
aaccctggaccaggggggacagtcggaccgaccaatctggagttcggctactaccgccct
ggcgccgtgaccggcgcggtgcggttcgaccgcgacgcggacaacaacctgttcggcgac
agcgagccggggatgcagggggtgacggtgacgctacggttgggcggcagcgatgtgctg
acgaccacgaccgacgcgaccggcgcgtacaccttcacgaacgtggcgccagccaacggt
tactcggtgcgggtcatcaaccccgatacggcgaacttcctgctggtgacgccgacaggc
ggcgataacgacatgcagagcaccgacggcggtaacacctacgccgaaaccaatccgttc
accgtcacatcgggcgcagtggtgagcgggtcgagcgacgcggcggtgcgcggacggtct
accgtgaacggcgcggtgtgggaagacctgaacggcaacggcgtgcgcgacggcggcgag
ggggtcggcgcgctgccgggggtgacggtgaacctgacggtgacggtcaacctgccgggg
ttgctgagcacgcagattgtgacgacgaccacgacggacgccagcggcgcgtacacggtc
acaaacctgccggggtgggcaagcgtcagcagcgaggtctcgttcacgctgcgctttgcg
acgccgacggggtggtacgagacgctggcggatgtggggccgcaaccggcgaacaacgat
agtgacgggatcggcgcaggcgcggatcaactcgacgaccagggattgcaacgcaacacg
accgcaacccgcgaccgggggtactaccgtccggtggtcattcaggtgcgggtgttcgag
gagacaacatcgccgattgacaacgcctacgctgcgggcgatgctcctgtgccgggcgca
acggtggcgctgacgccgaatgtaacccttggcggtccattcggacccgacgcgaccggc
atcatcagttacaccgtcgcgccaacgaccacggcatacacggtcggggtgacgccgccg
accggatacgtcgcctcaccggggaacaccggcacggcgacagcgccggcgccgctgacc
agcgggcagtccatcatgccgctgccgttcggctactaccgcaacggcgtcatcagcggc
acggtctggttcgacaccaacagcaacggtctgttcgacagcggcgagccgaccatggca
ggcgttacagtaacgctcaccctcgatcctgatacaaccgtcaacggcaatgaaacgtcg
ataggcacgttcacaaccggtgacaatggcatctaccagttcactgccatcacgccgacc
ggtgcgctgacatcgggaacgctgtatcgcgtccagtttgcgctgcctgccgggtatgcc
ttcaccgcgcagggcgcacctgtgacgacagacaacaacagcgatgcgagcacagtcaat
gggtacaccgaccgattcacggttggatcgaacgaaaccgtgacctacgtcgatgctggc
gcagtcggcaacctgtcgttaagcggtacgacgtgggaagacatcgatgctgatggtgtg
ttcgatgctggcgagtcgccgttgtcaggggtcacgctaacgttaactgtcacgagctca
atcaactcgactaaccccgtggtgacgtacacggtgacgagtggtgcgggttcgccaaac
tttacgttcaaccagttgcccgccggcaactaccagctcagcgtcaccggcaggccgctt
gggtatctgctctcgacgacgggaacattgagcggaaccctaccggcgaccgggcagaat
ttcggtctgtaccgcaccgcctcagtcggcgatcgggtctggctcgatgtgaacggcaac
ggcgcatacgaagccggtgtcgatgccggagtgccgggaattgccgttcggctgcgcgac
gcagcgactgatacggtcatctccacgaccacgacactggcgagtggtgatgtcggcttc
tacggcttcgagaacgtcacgccaggatcatatgtggtcgagttcgtcgtgccgaccggc
ttccagacagtcaacaacggcacggggtcgttgagcgtcgataacgacaacgatgcgcag
aacaacgggcgcactgcgtcgtttaccctggcgagcagccagatttcaacgaccgtcgat
gcggggttgatcggcagcgggtcgatctccggcattgcctgggtggacgagaacttcaac
gatgtgcgcgatcccggtgagacgcagcgcatcgcgggggtggcagtcactctgaccatc
acgccgaccggtttgggagcgccgctgacattcaacgcggtcaccgcaacaaatggcagt
tacgcctttggcaacctgccgccgggaacgttcgtgctgacgttcaccaaacctgccggc
tacttcgacatcgccacgcgcgttggcagcgacccgacaattgacagcgacgcgccggtg
gcaaccggcacgctgggcgccggtcagtcgatcacaacgctggacgccgggtatcggatg
caaacccgcgtcttcctgccgctgatcgccgtgccggtcaccccgccggacctggtggtc
gaggagttcacggtgacacctgccaagaccagttacgcagcaggtgagccggtgctgatc
acggtaaaagtgaagaacgtcggcggttcaccaacgactatcgggttctgggtggacctg
tacatcaacccatccgtcgcgccaacgacgcccaacgtgcgctggaatgatgtctgtggc
atctcgccgtgctacggtatcgcctggtacgtcaatcagtcgctggcgccagggcagagc
atcacgctgacatctgcgcctggtcagttcgcgggaccgcagtcggtctggcccggctct
ttcgctggcggcacgaacaccctgtatgtctacgtcgatagttacaacccgccggtgccg
acaggcgcggttgtggaaagcaatgaaaccaacaaccgcgctcagattaccggcttcgtc
gtcaccggcgcgtcgttgagcaatggcgcaggaccaggcacaccgtcaagcacgccggat
gcgccggttgcgttgccgccgcgccaattgcccggaccggttgagaggtaa
DBGET
integrated database retrieval system
