Roseiflexus castenholzii: Rcas_0944
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Entry
Rcas_0944 CDS
T00585
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rca
Roseiflexus castenholzii
Pathway
rca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Rcas_0944
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rca03019
]
Rcas_0944
Enzymes [BR:
rca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Rcas_0944
Messenger RNA biogenesis [BR:
rca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Rcas_0944
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_19
Phage_phiJL001_Gp84_N
ResIII
PG_binding_2
UvrD-helicase
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ABU57058
UniProt:
A7NHW1
LinkDB
All DBs
Position
complement(1250240..1251592)
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AA seq
450 aa
AA seq
DB search
MSFEIFRFHPQINAGIRDLGYHTPTPIQEQVIPHALAGRDVIGIAQTGTGKTAAFVLPIL
HHLMRGPRGRVRAMIVTPTRELAEQIQGVIEALGKHTGIRSVTLYGGVGYQGQIQRLRRG
VEIAVVCPGRLLDHLERGTLTLDHLEVLTLDEADQMFDMGFLPDVRRILRLAPVERQTML
FSATMPDAVRSLAREALRDPLTVQIGRSAPVATVTHAIYPVPEHLKTSLLIELLERTDAE
SVLIFTRTKHRAQRLGDTLARLGYRATSLHGNLSQNRRQAALDGFRSGRYQILTATDIAA
RGIDVARISHVINYDMPQTAEAYTHRIGRTGRAARTGDAFTLVTRGDTAMVRAIERLIGE
PLKREIVPGFDYNAAAPVHETRSDAVHSNRHTAPRHHEAHPHAAPHGAAPSRRRASRDHD
TGARPAHTPRITGMMRTERLDRREARRRRD
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgttcgagatttttcgttttcatccgcaaattaacgccggtatccgcgacctcgga
taccacacgccgaccccaatccaggaacaggtcattccccacgcgctggcaggtcgcgat
gtgatcggtatagcgcagaccggcaccggcaaaacggcagcgttcgtgttgccgattctg
caccatctgatgcgcggcccgcgtgggcgtgtacgcgccatgatcgtaacgccgacgcgc
gaactggcggaacagattcagggagtcattgaagcgctcggcaaacacaccggcattcgc
agcgtcacgctctacggcggcgtcgggtatcaggggcagatccagcgcctgcggcgcggc
gtcgagattgccgtcgtctgtccggggcgattgctcgaccatctggaacggggaaccctg
acgctcgaccaccttgaggtgctgacgctcgacgaagccgatcagatgttcgacatgggc
tttctgcctgatgtccgaaggattctgcgtctcgcgcctgtggaacgccagacgatgctc
ttttcggcgacgatgcccgacgcagtgcgttcgctggcgcgtgaggcgctacgtgatccg
ctgacggtgcagatcgggcgcagtgcgccggttgcgaccgtcacccacgcgatctatccg
gttcctgagcatctgaagacatcgctgctgatcgagttactggaacgcaccgatgccgaa
tcggtgttgatcttcacccgcacgaagcatcgcgcgcagcgcctgggcgataccctggcg
cggctggggtatcgcgcaacatcgttgcacggcaatctgtcgcagaaccgtcgccaggcg
gctctcgacgggttccgcagcggtcggtaccagatactgacggcgaccgacatcgcggcg
cgcggaatcgatgtggcgcgcatttcgcacgtgatcaactacgatatgccgcaaaccgcc
gaggcgtacacgcatcgcatcgggcgcaccgggcgcgccgcgcgcaccggcgatgccttc
accctggtgacgcgcggtgatactgcgatggtgcgcgcaatcgaacgattgatcggcgag
ccgttgaagcgagagatcgttccggggttcgattacaacgccgctgcgccggttcacgaa
acccgatctgatgcggtccattccaatcgtcacactgccccccgccatcacgaagcgcat
cctcacgctgcgccccatggcgctgcacccagccgccgtcgcgcgtcccgcgaccacgat
acgggcgcgcgcccggctcatacaccccgtataacggggatgatgcgcaccgaacgtctt
gatcgcagagaggcgcgacgcaggcgagattga
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