Roseiflexus castenholzii: Rcas_1597
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Entry
Rcas_1597 CDS
T00585
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rca
Roseiflexus castenholzii
Pathway
rca03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rca00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Rcas_1597
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rca03021
]
Rcas_1597
03400 DNA repair and recombination proteins [BR:
rca03400
]
Rcas_1597
Enzymes [BR:
rca01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Rcas_1597
Transcription machinery [BR:
rca03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Rcas_1597
DNA repair and recombination proteins [BR:
rca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Rcas_1597
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
DUF2016
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
ABU57690
UniProt:
A7NJM0
LinkDB
All DBs
Position
complement(2051203..2055711)
Genome browser
AA seq
1502 aa
AA seq
DB search
MLEINDFSAIRISLASPEDILSWSHGEVTKPETINYRTLKPERDGLFCERIFGPTKDWEC
YCGKYKRVRYKGVVCDKCGVEVTRSKVRRERMGHISLASPVSHIWFVKGTPSRLGLLLDI
SPRNLERVLYFASYIIVHVDEEVKAHRREALQAEYREKRERIQAEAESRQIELSTQLTQD
LGGMESAQLSTQRRIEEEYRRLRDEISAEAERLRTDLEEKQGEAAEEDIIFRGTVLVEEG
ESITEKTLDALDELLDQELETLEQRKQRDLEDAEQLTGAERERKEYEASQERERLQERLQ
SELDRLVREEKERLEQLDSIKLKRILNEQEYRALREIAPGAFRADMGAGAIRDLIVRTVD
LDKLAEELQNEVYTTQGQRRKKATKRLRVVEAFRKSGNRPEWMILTVLPVIPPDLRPMVQ
LDGGRFATSDLNDLYRRVINRNNRLKRLMELNAPEIIVRNEKRMLQEAVDALIDNGRRGR
AVSGKGKHRLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPDLKLHQCGLPKKMAL
ELFKPFVMRRLVEKGAAHNIKSAKRIVERVRPEVWDVLEEVIKDYLVLLNRAPSLHRLSI
QAFEAKLIEGSAIQLHPLVCAAFNADFDGDQMAVHVPLSRKAQEEARMRMLSKYNLLSPA
TGDPIITPSQDIVLGCYYLTMVRDGAKGSGKMFASIDEALLAYDKGLVDIQAPIFVRMTG
TLHGESDRPVRILNSDENGAPRMLLETTIGRIIFNNELLEPLRFRNRLIAKKGLREIIAD
CYKYYTNLNNLTEADLDTIRTMYGDRPRDDLARYFGSEMTASQADRIKTLGFKYATRGGM
TIGVDDIEIPPKKQEILAEAEKRVAEVERQFRRGLITEEERYREIVEIWQNATKQTTEAV
KQYLNPFGPVAMMVNSAARGNINQLSQMAGMRGLMSDPTGRIIELPIKSNFREGLSVLEY
FVSTHGGRKGLADTALRTADAGYLTRRLIDVAQDNIVTIDDCGTDEGLWIYRSDDREVLQ
DFEQRILGRLLAAPLVDPRTGEVLADRNAEIDEALTRRCKELGIDAVYVRSPLACKADYG
ICRMCYGRNLATGKLVDIGEAVGIIAAQSIGEPGTQLTLRTFHTGGVASADDITQGLPRV
QEIFEARTPKGKAILAEIDGIVELVREDEVRKIRVVSTDLYTDDHVLPPHYEPVVADGAQ
VNEGDVLAQSNRADLDSEPIVARLAGVVRIGAGQISVINEEREVREVIAPHTARLAAGIE
NGARVVAGQHLTEGSADPQELLALQGREAVQRYLVNEAQKVYRSQGVDINDKHIEVIVRQ
MLRRVRIEEPGDTDYLPGELIDSTEFVRRNAEIISQGGEPATASTMLLGITKASLTTDSF
LAAASFQETTRVLTEAAITGKVDYLRGLKENVVIGKLIPAGTGIEKRRQLAEEVIGELAN
VVPTSTAVVEQERPEREADEALRRRLRALIGSDDNGDEVGKNGEFADETPFTGDSDDRDN
EI
NT seq
4509 nt
NT seq
+upstream
nt +downstream
nt
atgcttgagatcaacgacttcagcgctattcggattagtctcgcgtcgccggaagacatt
ctgagctggtcgcacggcgaagtcaccaagccggagacgatcaattatcgcacgctgaaa
cctgagcgtgatggtttgttctgcgaacgcatcttcggtccgacgaaggactgggaatgc
tactgcggcaagtataagcgcgtgcgctacaaaggcgtcgtctgcgataagtgcggcgtt
gaggtgacacgctcaaaagtgcggcgcgagcggatggggcatatttcgctggcgtcgccg
gtgtcgcatatctggtttgtcaaaggtacgccgagtcgccttggtctgctgctcgacatt
tcgccacgcaacctggagcgggtgttgtatttcgcgtcgtacattatcgtccatgtcgat
gaggaggtcaaggcgcatcggcgcgaagcattgcaggcggagtatcgggaaaagcgtgag
cgtattcaggcggaagccgagagccggcagattgagctttcgacccaattgacccaggac
ctgggcgggatggagagcgcccaactctcgacgcagcggcgcatcgaggaggaataccgg
cgactacgcgatgagatcagcgccgaggcggagcggttgcgcaccgatctcgaagaaaaa
cagggtgaagcggctgaggaggatattatcttccgtgggacggtgctcgttgaagagggt
gagagtattaccgaaaagactctcgatgcgctcgacgaactgctcgatcaggaactggaa
acgcttgaacaacggaagcagcgcgatctcgaggatgccgagcaattgaccggcgccgaa
cgtgagcgcaaagagtacgaagccagccaggagcgtgaacgcctccaggagcgtctgcaa
agcgaactcgaccgattggtgcgcgaggagaaggagcgcctcgaacaacttgactcgatc
aaactgaagcgcatcctcaacgaacaggagtaccgcgcgctgcgcgagattgcgccgggt
gcgtttcgcgccgatatgggcgccggggcgatccgcgacctgatcgtgcgcacggttgat
ctcgataaactggcggaggaattgcagaacgaggtctacaccacgcaaggtcagcgacgc
aaaaaggcgacgaagcgcctgcgggtggtggaggcgttccgcaagagcggtaatcgcccc
gagtggatgatcctcacggtgctgccggtcattccgcccgatctgcgcccgatggtgcaa
ctcgacggcggtcgcttcgccaccagcgacctcaacgatctctatcggcgcgtgatcaac
cgcaacaaccgcctgaagcgcctgatggaactcaatgcgccggagattattgtgcgcaat
gagaagcgaatgctccaggaagcggttgatgccctgatcgataatggtcgccgcgggcgc
gcagtttccggcaagggcaagcatcgcttgaagagcctgagcgatatgctcaaggggaag
caggggcgtttccgccaaaacctgctcggcaaacgtgtcgattactctggtcgctcggtg
attgtggtcggaccagacctcaaactacaccagtgcggtctgccgaaaaagatggcgctc
gagttgttcaagccgttcgtcatgcgccgcctggtggaaaaaggcgccgcgcacaatatc
aagagcgccaagcgcatcgttgagcgcgtccgccctgaggtgtgggacgtgctcgaagag
gtgatcaaagattatctggtgctgctgaatcgcgcgccatcgctgcaccgcctctcgatc
caggcgtttgaagccaaactgatcgaggggtcggccattcagttgcatccgctcgtctgt
gcagcgttcaacgccgacttcgacggcgaccagatggcggtgcacgtgccgctgtcgcgc
aaggcgcaggaagaagcgcgcatgcgcatgctctccaagtacaacctgttgtcgccggct
accggcgacccgatcatcacgccatcgcaggacatcgtgcttgggtgctactacctgacg
atggtccgggatggtgcgaagggaagcggcaagatgttcgcctcgattgatgaggcgctg
ctggcatacgataaggggctggtcgatattcaagcgccgatcttcgtgcgcatgacggga
acgctgcacggtgagagtgatcgcccggtgcgcatcctcaactctgatgagaacggcgcg
ccgcgtatgctgctggaaacgacaatcgggcggatcattttcaataatgaactgctcgag
ccgctgcgcttccgcaatcgcttgatcgccaagaagggtctgcgtgagattatcgccgat
tgctacaagtactacacgaacctcaataacctgaccgaggcggacctcgatacgattcgc
accatgtacggtgatcgcccgcgcgatgacctggcacgctactttgggtcggaaatgacg
gcaagccaggcggatcggatcaagacgcttggcttcaaatatgcgacgcgcggcggtatg
acgatcggtgtggatgacatcgaaattccgccgaagaaacaggagattcttgccgaagcc
gagaagcgcgtcgccgaggtggagcggcagttccgacgcggtctgatcactgaagaggaa
cgctaccgcgaaattgtcgagatctggcagaacgccaccaagcagacgaccgaagcggtc
aagcaatatctgaacccattcggtccggtggcgatgatggtcaactccgctgcccgcggc
aatattaatcagttgagccagatggccggcatgcgcgggttgatgtccgatccgacagga
cggatcattgaactgccgatcaagagtaatttccgtgaagggctctcggtgctcgaatat
ttcgtgtcaacccatggtgggcgcaagggtctggcggacacggcgctgcgcacggcggac
gccgggtatttgacgcgccgcctgattgatgttgcgcaggataatatcgtgacgatcgat
gactgcggtacggatgaaggtttgtggatctaccgctccgacgaccgcgaggtgttgcag
gatttcgagcagcgcatccttgggcgtctgctggcggcgccgctcgtcgatccgcgcacc
ggcgaggtccttgccgatcgcaacgcggagattgacgaagcattgacccgtcggtgcaag
gaactcggcattgatgcggtgtatgtccgctcgccgctggcatgcaaagccgactatggc
atctgccgcatgtgctatgggcgcaacctggcaaccggcaaactggtcgatattggcgaa
gcggtcggcatcatcgccgcacagtcgattggtgagccgggcacgcagttgaccctgcgc
acgttccataccggcggcgtggcatcggctgacgatattacgcagggtctgccgcgcgtc
caggaaatctttgaggcgcgcacgcccaaaggcaaagcgatcctggcggaaatcgacggc
attgtcgaattggtgcgtgaggacgaggtgcggaagattcgcgtcgtctcaactgacctc
tacaccgatgatcacgtattgccaccgcactatgagccggtggtcgcagatggagcacag
gtgaatgagggggatgtgctggcgcagagtaatcgcgccgatctggacagcgagccgatt
gtggcgcgtcttgcaggggtcgtgcggatcggcgccggacagatcagtgtcatcaacgaa
gagcgcgaggtgcgcgaagtgattgcgccgcatacggcgcgcctggcggccggcatcgag
aatggcgcccgcgttgtcgccgggcagcacctgacggaaggatcagccgatccgcaggaa
ctgctggcgctccaggggcgcgaagcggtgcaacgctacctggtcaacgaggcgcagaaa
gtgtatcgttcccagggtgttgatatcaacgataagcacatcgaagtcattgtgcgccag
atgctgcgccgtgtgcggatcgaggaaccgggcgatacggattacctgccaggcgagttg
atcgactcgacggaatttgtgcgccggaatgccgagattatcagccaggggggtgagccg
gctacggcatcgacgatgctgctgggcatcaccaaggcatcactcaccactgatagtttc
ctggcagccgcgtcgttccaggagacaacccgcgtgttgaccgaagcagccatcacgggc
aaggtggattacctgcgcggtctcaaggagaatgtggtcatcggcaaattgatcccggca
ggaaccggaatcgagaaacgacgccaactggctgaagaggtcatcggcgaactggcgaac
gtcgtcccgacatccacggcggttgtcgaacaggagcggcccgaacgcgaagcggatgag
gcgctgcgacgcaggctgcgggcgctgatcggcagcgatgacaatggcgatgaggtgggg
aagaacggcgaattcgccgatgagacgccgttcaccggtgatagcgacgaccgcgacaac
gagatctga
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integrated database retrieval system
