Roseiflexus castenholzii: Rcas_2015
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Entry
Rcas_2015 CDS
T00585
Name
(GenBank) RNA binding S1 domain protein
KO
K02945
small subunit ribosomal protein S1
Organism
rca
Roseiflexus castenholzii
Pathway
rca03010
Ribosome
Brite
KEGG Orthology (KO) [BR:
rca00001
]
09120 Genetic Information Processing
09122 Translation
03010 Ribosome
Rcas_2015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03011 Ribosome [BR:
rca03011
]
Rcas_2015
Ribosome [BR:
rca03011
]
Ribosomal proteins
Mitochondria/ Chloroplast
Small subunit
Rcas_2015
Bacteria
Rcas_2015
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
S1
S1_RRP5
Spt6_S1
PCB_OB
OB_RRP5_4th
RNase_II_C_S1
DUF2110
DUF7804
CvfB_2nd
DUF4537
Motif
Other DBs
NCBI-ProteinID:
ABU58103
UniProt:
A7NKT3
LinkDB
All DBs
Position
2582455..2583690
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AA seq
411 aa
AA seq
DB search
MEQQEQAATNHQQTNAAQSFGDAANGQSADQRDDRELMEQFLANPAHDYRNLQYGDTVDG
IIMRVGRDEILVDIGAKAEGVVPAREMQSLSDDDRAALKPGDPLLVFVVQSEDKEGRATL
SIDRARQEKSWRRLQQCYETGEIIEAKVINYNKGGLLVNLDGVRGFVPSSQVSGIGRGSE
AQKQSEMARMVGQTLALKVIEINRNRNRLILSERQAAMDVREGRKGELLSALKEGDVREG
VVTSVCDFGAFVDIGGADGLVHLSELSWSRVKHPSEILKPGDKVQVYVLSIDNERKRIAL
SLKRTQHEPWATVGERYHIGQMVEGVVTQLAPFGAFVRIEDGVEGLIHVSEMGDGRVQHP
RDVLQEGDAVQARIIRIDPARKRIGLSMRQSSDDQIAHQSSDKEEESDADE
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atggaacagcaagaacaggctgccacaaaccatcaacagacgaacgctgcccaatcgttc
ggcgacgctgcgaatggccagtcagccgatcagcgtgacgaccgggaattgatggagcag
ttcctcgccaaccctgctcacgactaccgcaatcttcaatatggtgatacggtcgatggc
atcatcatgcgcgtcggtcgcgatgagattctggtcgacatcggcgccaaagccgagggt
gtggtgccggccagagagatgcagtcgctctctgacgatgatcgagcggcgttgaaaccg
ggcgatccgctgctggtctttgttgttcaatccgaggacaaagaaggtcgagcgacgctc
tcgatcgatcgggcgcgtcaggagaagagttggcgtcgcttacagcagtgttatgagacc
ggcgagattatcgaagcaaaagtgattaactacaacaaaggtgggctgcttgtcaatctc
gatggtgtgcgcggatttgtgccttcctcgcaggtcagcggcatcggtcgcggctccgag
gcgcagaagcagtcggagatggcgcgcatggtggggcagacgctggcgttgaaggtgatc
gagatcaatcgtaatcgcaatcggttgatcctctcggaacgccaggctgcaatggatgtg
cgcgaagggcgcaaaggtgagttgctgtcggcgctgaaagaaggcgatgttcgggagggc
gtcgtcacatccgtttgtgacttcggcgcgtttgtcgatataggcggcgccgatgggttg
gtgcatctttcggaactttcctggagccgggtcaagcatccgagcgagattctgaagccg
ggtgacaaagtgcaggtgtatgtgctcagtatcgataatgagcgtaaacggattgcgctc
tcgctgaagcgtacccagcacgagccgtgggccacggttggcgagcggtatcacattggc
cagatggttgagggtgtcgtgacgcaactggcgccgttcggcgcattcgtgcggattgag
gacggggttgaagggctgatccatgtgtctgaaatgggtgatggacgggtccagcatccg
cgcgatgtgttgcaggaaggcgatgcggtccaggcacgcatcatccgtatcgatccggcg
cggaagcgcatcggtttgagcatgcgccagtcatccgacgatcagatcgcgcatcagtca
tccgacaaagaagaggagtctgatgctgacgagtga
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