Roseiflexus castenholzii: Rcas_3710
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Entry
Rcas_3710 CDS
T00585
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
rca
Roseiflexus castenholzii
Pathway
rca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Rcas_3710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rca03021
]
Rcas_3710
03019 Messenger RNA biogenesis [BR:
rca03019
]
Rcas_3710
Transcription machinery [BR:
rca03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Rcas_3710
Messenger RNA biogenesis [BR:
rca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Rcas_3710
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA
NACHT
Mor
Motif
Other DBs
NCBI-ProteinID:
ABU59750
UniProt:
A7NQA4
LinkDB
All DBs
Position
complement(4862737..4864074)
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AA seq
445 aa
AA seq
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MPRMRTKNTTTNNGGEPVAEYTEPVRDKPMINVAELESKTLNELREMAKAIGVTGVSTLK
KQDLIFKLLQMQTEEAGHTLSDGILDIVADGYGFLRGERMLPGPDDVYVSQSQIRRFGLR
TGDRVWGQIRPPKESERYYSLLRVEMVNGMDPETARKRPSFDQLTPIFPNEQIKLETEPH
LLATRLVDLVAPIGRGQRGLIVSPPKAGKTLLLKAIANGITTNYQDIHLMVLLIGERPEE
VTDMRRSVKGDVISSTFDEPVEDHTKVAEMTLERAKRLVEGGQDVVILMDSITRLARAYN
LDMPPSGRTLSGGIDPVALYPPKRFFGAARNIENGGSLTIIATCLVDTGSRMDDVIYEEF
KGTGNMELHLDRKLAEKRVFPAIDITRSGTRREELLLSPDVLRQVWTLRRMVGMLGEGEG
TELVLTRMAKTRNNAEFLATLSKAN
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
gtgccaagaatgagaacgaaaaataccaccaccaacaatggcggcgaaccagtcgctgag
tacacggaacccgttcgcgacaagcccatgattaatgttgccgaactggaaagcaaaacg
ctcaatgagttgcgcgaaatggcgaaagcgatcggtgtgaccggtgtgagcaccctcaag
aagcaggatttgattttcaaactgctccagatgcaaaccgaagaagcgggtcataccctg
tccgacggcattctcgatattgtcgccgatgggtatggattcctgcgcggtgagcggatg
ctgccgggaccggatgatgtctatgtgtcgcagtcgcaaatccggcgcttcggcttgcgc
accggcgatcgcgtctggggtcagatccgtccgccaaaggagagtgagcgctactactcg
ctcctgcgggttgaaatggtcaatgggatggacccggagacggcgcggaagcgtccgtcg
ttcgatcagttgacgccgatctttcccaatgagcagattaaactcgaaaccgaaccgcac
ctgctcgctacccgcctggttgatctggtggcgccgatcggtcgcgggcagcgcggtctg
atcgtgtcgccgcccaaagccggcaagacgttgctgctcaaggcaatcgccaacggcatt
acgaccaactatcaggatattcacctgatggtgctgctcatcggtgagcgcccggaagag
gttaccgatatgcggcgttcggtcaagggggatgtcatttcgtcaaccttcgatgagccg
gtcgaggaccatacgaaggtcgccgagatgacgctggaacgcgccaaacgcctggtcgaa
ggcgggcaggatgtggtgatcctgatggactcgatcacccgcctggcgcgcgcttacaac
ctggatatgccgccgagcggacgcacgctctccggcggtatcgatccggtggcgctttat
ccgcccaaacgcttcttcggcgctgcgcgcaatatcgagaatggcgggtcgcttaccatt
attgcgacctgtctggtcgataccggtagccgtatggacgatgtgatctacgaggagttc
aaaggcaccggcaatatggaattgcacctcgaccgcaaactggcggagaagcgcgtcttc
ccggcaatcgatattacccgcagcggtacgcgccgtgaggaactgctgctgtcgcccgat
gtgttgcgtcaggtgtggacgctgcgccgtatggtcggtatgctcggtgagggtgaaggc
accgaactggtgctgacgcgcatggcgaagacgcgcaataatgctgagttcctggcgacg
ctgagtaaggcgaattag
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