Roseiflexus castenholzii: Rcas_3915
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Entry
Rcas_3915 CDS
T00585
Name
(GenBank) alpha amylase catalytic region
Organism
rca
Roseiflexus castenholzii
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Alpha-amylase
Glyco_hydro_70
Motif
Other DBs
NCBI-ProteinID:
ABU59950
UniProt:
A7NQV4
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Position
5116383..5118371
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AA seq
662 aa
AA seq
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MISRVLAVILIMKDMPMNFIRDTLSRPRPPSVRRSVQLPRRVTYYPSPVDWRDEVIYFLL
VDRFSDGQEETRPLLDRRYLAAARPTLPNGEPWRWDRWAVSGGERFQGGTLRGVVSKLGY
LHRLGVTTLWLSPVCKQRGHLNTYHGYAIQDFLDVDPRFGTRQDLVDLVSAAHEQGMRVL
LDIVFQHSGPNWRYPPDVPGGAEMPRYTTGRYPFGSWLDATGAPLLGVPDVDDAAWPDEM
RNVGYYTRAGAGDLGAGDLNDPAAEHKRSDFFTLRDIDLDAPGALTDMALCYKYWIALTD
CDGFRLDTLKHVSFEQARNFCGTIKEFAANLGKTNFFLVGEVAGGDFAATRYLDALERNL
NAALDIGEMRLALSDVAKGLAPARAYFDGFVPGLAIMGSHRNLGSRHISILDDHDHVFGA
KLRFSTDVMAQHQAAVAAALQLFTLGIPCIYYGTEQALGGPELSERRWLPEWGRADRYLR
EAMFGPLHPRASERAGLDPQARDGSLPGFGPFGTAGSHCFDERFPVYVRIAALSALRAAY
PVLRHGRQYLRPISNFNQPFAFPPAGEIIAWSRILDDEEALCVINPHGVAARGGDVVVDA
ALNRPGDMLTIILNTAQSADPLGYVGPHPVGQRLPVRERNGASYVEIRNLPPAETLVLTN
RP
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgatctcaagggtcctggcggtgattttaataatgaaggacatgcccatgaacttcatc
cgtgacaccctgagtcggccacgcccgccaagtgtcaggcgctcggtgcaactgccgcgt
cgcgtgacgtactacccctctccggtcgactggcgcgatgaggtgatctattttctcctc
gttgatcgattcagcgatggtcaggaagagacccgcccgttgctcgaccggcgctatctg
gcggcagcgcgcccgacactgcccaatggtgagccgtggcgctgggaccgctgggcagtg
tcgggcggtgaacggtttcaaggcggaacgctgcgcggcgtggtctcaaaactcggctac
ctgcaccggctcggcgtcaccactctgtggctcagcccggtctgcaagcaacgcggtcac
ctgaacacctaccacggctacgcaatccaggattttctcgatgttgatccgcggtttggc
acgcgccaggacctcgtcgatctcgtcagcgccgcgcatgaacagggaatgcgcgtgcta
ctcgacattgtgttccagcactccggtcccaactggcgctacccgccggatgttcctggc
ggcgcggagatgccgcgctacacgactggacgttatccgttcggcagttggttggacgcg
accggcgcgccgctcctgggcgttcccgatgtcgatgatgctgcctggcccgatgagatg
cgcaatgtcgggtactacacgcgggctggcgccggagatttgggcgctggcgatctcaat
gatccggcggcagagcacaagcgctccgatttctttacgctgcgcgacatcgatctcgac
gcgcccggcgcgctgacagacatggcgctctgctacaaatactggattgcgctcaccgac
tgtgatgggtttcgcctcgacacgctcaaacacgtctcgttcgagcaggcgcgcaacttc
tgtggcacaatcaaagagtttgccgccaacctgggcaagaccaacttcttcctggttggc
gaggtggcgggcggcgattttgctgcgacgcgctacctcgatgcgctggaacgcaacttg
aacgcggcactcgacattggcgaaatgcggttggcgctgagcgacgtggcgaaaggtctg
gcgccagcacgcgcctatttcgacggatttgttcccgggcttgccattatggggtcacac
cgcaacctcggcagtcggcacatctcgatcctcgacgatcacgatcacgtttttggtgcg
aaactgcgcttttcgaccgatgttatggcgcagcatcaggctgcggttgcggcggcgttg
caattgttcacgctcggcattccgtgcatctactacggcacagaacaggcgctcggtggt
ccagagctgtcggagcgccgctggctgccggagtgggggcgtgccgatcgttacctgcgt
gaggcgatgtttggtccgctgcatccgcgtgcatcggaacgcgctggactcgatccacag
gcgcgtgatgggtcgttgccggggtttggtccgttcggcactgccgggagtcactgcttc
gatgagcggttcccggtctatgtgcggattgcagcgctgagtgcgttgcgtgccgcctat
ccggtattgcgccatgggcgccagtacctgcgcccgatctcgaatttcaaccagccattc
gcttttccgccagccggagaaatcatcgcctggtcgcgcattctcgacgacgaagaagcg
ctgtgcgtcatcaacccacacggcgttgccgcgcgcggcggtgatgtcgtggtcgacgcg
gcgctgaaccgtcctggcgatatgctgaccatcatcttaaacacagcgcaatctgctgat
ccgctggggtacgtcggaccacacccggtcggtcagcgtctgccggttcgagagcgcaac
ggcgcgtcgtatgttgagattcgcaacttgccgccagccgaaacgctggtgttgaccaat
cgaccataa
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