Roseiflexus castenholzii: Rcas_4188
Help
Entry
Rcas_4188 CDS
T00585
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rca
Roseiflexus castenholzii
Pathway
rca03420
Nucleotide excision repair
rca03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Rcas_4188
03430 Mismatch repair
Rcas_4188
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rca03400
]
Rcas_4188
Enzymes [BR:
rca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Rcas_4188
DNA repair and recombination proteins [BR:
rca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Rcas_4188
MMR (mismatch excision repair)
Other MMR factors
Rcas_4188
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
Peptidase_M78
UvrD_C_2
PDDEXK_1
AAA_11
AAA_30
DUF6221
Motif
Other DBs
NCBI-ProteinID:
ABU60218
UniProt:
A7NRM2
LinkDB
All DBs
Position
complement(5417054..5420596)
Genome browser
AA seq
1180 aa
AA seq
DB search
MSVHSQHIRAFARDIRRSYLERSGGAPAHPLPLDDLAETLWGLTVVPTMTLAAGIQGKVE
PELQVIRVRRDLPPTRQRFVVAHEIGHVALEGLTAGPFRDTDDTLDERAVGEDADETAVR
TYNTRERREREANLFALELLAPAEDIWQAVQQPDWSIETLAAHFAVSSDALCAQLANVCL
LEPPVSPEASVNARTTLCILDQEQQAAVDAPLPLLLAAGPGTGKTRSIVAKYVSLVRQGV
DPASILALTFSNRAAEEMRERIVAALRHEAPRLVGRIEISTFHSWGLNVLRIYGARLGLP
VDARLLDTADLFILLSKRLNDLRLAYFKDVREPTRHLLTIIQAISRIKDELWSPDEFSRL
ADVEAQRLIAAAERDYPGATRKAIEARERAARQAAALRELAQVYPRYEAMLREAGALDYG
DLIVLPAQALRDHPAIAADLRRRYHYLLVDEFQDINYASGELIRLLDGGRGRVWAVGDAW
QSIYRFRGASAANLDEFPRYYPNARIFYLTRNYRSLQPILDAGAAVMSGDPRAAERPPLV
AQRNGGGAHTVVEWAAPRSQDEYAALARDILRRVRLRNRWLASGCAARCRMPRSGTMRRV
ARRPPLSTRQWRFGDHAILCRTHEQAGAVAAVLETHGIPVDYINDVFDTPGVKDALAVCA
QVGATNSAGLLRALTMPEHRLDPADLNRLVDLARRSQQALPRAARDPQIIACLSEAAQQT
LARIRIIVEALEGEGDAWQVLTAYLFRHSRAMRARLIHAAQGHIRAQRELAALGQLLAIA
RNFVRAAAPDECDASHFIDYIRALRAAGVRPRSSIGGQVDAVRVMTVHAAKGLEFPIVYV
PGLQEGRFPVRGNQRGIPLPAGLIRGPIESEEQEERYLLYVAMTRARDRLVLSRSLTCGD
GAKSAERSSLLPGDGQGNGAPWRVRFIESAVNCPVPTPDMRLQDTPLPRMPLPASSIDLD
GCKRRFLYQYVYQLYDDLSPFLRMHQTIRECAKILTEQARRDALPADEAGLRTLVFGQLQ
RYELDSVLYADDYAAEALRHARTVWDDLRTGRLSPECVDRRVIVRRPAGTIEVRIDREDM
QDGVTRWVWVRPGMPRNDDHLAERVMLYALARQETPDPPDEIVIAYTGTGDVRRATPRAQ
VLANHTEKIDRLLEAMRARHWEPLFGPQCDTCPFNLICPV
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtccattcacaacacattcgcgcattcgcacgcgatattcgccgatcctacctg
gagcgcagcggtggcgcgccggctcatccgcttccgcttgacgatctggcggagaccctt
tgggggttgaccgttgttccgacgatgacgctcgctgcgggcattcagggaaaggtcgag
ccggaacttcaggtcattcgggtgcggcgcgatcttccgccgacccgccagcgctttgta
gtggcgcatgaaattggtcacgtggcgctcgaaggattgactgccggtcccttccgcgac
accgacgatacgctcgatgagcgcgcggttggtgaggacgccgatgagacggcagtgcgc
acctacaacacgcgcgagcggcgcgaacgagaggcgaacctttttgcgctcgaactgctg
gcgccggcggaggatatctggcaggcggtgcaacaaccggattggagcatcgaaaccctg
gcggcgcacttcgctgtttcgtccgatgccctttgcgcgcagttggcgaatgtctgcctc
ctcgaaccgccggtgtcgccggaagcgtcggttaacgcgcgcaccactttatgtattctc
gaccaggagcagcaggcggcggtcgatgcgccgctgccgctgttgctcgccgcaggacct
ggcaccggcaagacgcgcagcattgtggcgaagtatgtgtcgctggtgcgtcagggggtc
gatccggcgtctattctggcgctgacattctcgaaccgggcggcggaagagatgcgtgag
cggatcgttgcggcgcttcgacacgaggcgccgcgtcttgtcgggcgcatcgagatcagc
acgtttcactcatggggcttgaatgtgctgcggatctacggagcacgcctcgggctgccg
gttgatgcgcgtttgctcgatactgccgatctcttcatcctactgtcgaaacgcctgaac
gatctgcgtctggcgtatttcaaagatgtgcgcgaaccgacccggcatctgttgacgatt
attcaggcaatcagtcgtatcaaggatgaactgtggtcgcctgatgagttttcgcgtctg
gcggacgtggaagcgcaacgcctgatcgcagcagcggaacgggattatcccggcgcgacc
cgcaaagcgatcgaagcgcgcgaacgcgctgcgcgacaggctgccgctctgcgtgaattg
gcgcaggtctatccacgctacgaagccatgctgcgcgaagcgggcgcactcgattatggc
gatctgattgttctgccggcgcaggcgttgcgcgaccatccggcaatcgccgccgatctc
cgccggcgctaccactacctgctcgttgacgagtttcaggacatcaactatgcgtcgggt
gaactcatccggttgctcgatggcgggcgtgggcgggtgtgggcagtcggcgatgcgtgg
cagagcatttaccgctttcgtggcgcttccgccgcgaacctcgacgaatttccacggtat
tatccgaatgcgcgtatcttctacctgacgcgcaactatcgttcgctgcaaccgatcctc
gacgccggcgctgccgtgatgtctggcgatccgcgcgccgccgaacgacctccgcttgtg
gcacagcgcaacggcggtggggcgcacacggtcgttgagtgggctgcgccgcgcagccag
gatgaatatgccgctcttgcccgtgatattctgcgccgggtgcgactgcgcaatcgctgg
ttggcatcgggctgcgcggcgcggtgtcggatgccgcgctctggaacgatgcggcgagtg
gcgcgccgtcccccgctttcgacccgccagtggcgttttggtgatcatgccatcctctgc
cgcacccacgagcaggcaggcgcggttgctgctgtgcttgaaacgcacggcattcccgtc
gattacatcaacgacgtgttcgatacacccggcgtcaaggatgccctggcagtctgcgct
caggttggtgcaaccaatagcgccgggttgttgcgcgcgctgacgatgcccgaacatcgg
ctcgaccctgccgatctcaaccggttggtcgatctggcgcgacgaagccagcaggcgctg
ccgcgcgccgcgcgcgacccgcaaatcatcgcctgtctcagcgaggcggctcagcaaacg
ctcgcgcggattcggataattgtggaagcgctggaaggcgaaggagacgcctggcaggtg
ttgactgcatacctgttccggcacagtcgggcgatgcgcgcgcggttgatccacgctgca
cagggacatatccgggcgcagcgcgaacttgcggcgcttggtcaactgcttgccattgcg
cgcaactttgtgcgcgcggcagcgccggatgaatgtgatgcatcgcatttcatcgactac
attcgcgccctgcgcgccgctggcgtgcggccacgatcatcgatcggcgggcaggtggac
gcggtgcgggtgatgacggtgcatgccgcgaaagggctggagtttccgatcgtgtacgtt
ccgggattgcaggaagggcgattcccggtgcgtggcaatcagcgcggcatcccattgccc
gccggtctcattcgcggtccaatcgagagtgaagagcaggaggaacgctacctgctctat
gtggcgatgacccgcgcgcgcgaccggttggtgctgagccggtcgctaacgtgcggcgat
ggcgcgaaatcggcggagcgctcgtcgctgcttcccggtgacggtcaggggaacggcgct
ccatggcgcgtgcgattcatcgaaagtgcagtgaactgccctgtgccaacgcccgacatg
cgtctgcaagacacgccactgccgcgcatgccgctgcctgcttcgagtatcgacctcgac
ggttgcaaacggcgcttcctctaccagtatgtctaccagttgtacgatgacctgtcgccc
tttttgcgcatgcatcagacgatccgcgaatgcgccaaaattctgacggaacaggcgcgc
agggatgctcttcctgctgatgaagccgggctgcgcaccctggtgttcggtcagttgcaa
cgctatgaactcgatagtgtactctacgccgatgactacgctgccgaggcgctccggcac
gcacggaccgtgtgggacgatctgcgcaccggacggctctcgcccgagtgtgtggaccgg
cgggtaatcgtgcgacgacctgccgggacgattgaggtgcggatcgatcgtgaggacatg
caggacggcgtgacgcgctgggtatgggtgcgtccagggatgccgcgcaatgacgatcac
ctggcagagcgggtgatgctgtacgctctggcgcgccaggagacgcccgatccacctgat
gagatcgtcattgcctacaccggaaccggtgacgtgcgccgcgctacgccccgcgcacag
gtattggcgaaccacacagaaaagatcgatcgtctgctggaagccatgcgcgcgcgacat
tgggagccgttgttcggtccacagtgtgatacgtgtccgtttaatctgatctgcccggta
tag
DBGET
integrated database retrieval system
