Roseiflexus castenholzii: Rcas_4348
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Entry
Rcas_4348 CDS
T00585
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD family
KO
K03086
RNA polymerase primary sigma factor
Organism
rca
Roseiflexus castenholzii
Brite
KEGG Orthology (KO) [BR:
rca00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Rcas_4348
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rca03021
]
Rcas_4348
Transcription machinery [BR:
rca03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Rcas_4348
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Sigma70_r4_2
HTH_29
HTH_11
HTH_20
Exonuc_VII_L
Motif
Other DBs
NCBI-ProteinID:
ABU60372
UniProt:
A7NS26
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Position
complement(5599697..5600896)
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AA seq
399 aa
AA seq
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MQEGRSMTTEIVEQTRQAWAQTLEYLLDIGRTRGFLTYNEILEALPQPEYHVADVDQLYA
SLQAEGIRVVETPLDMSDHGAVGDDELLAEMPDLTDVALDDPVRMYLQEIGQVPLLSAEQ
EVMLAKAMEAGHRARRALECEEYSSWQERMMYEQQVAQGNEARQHLIQANLRLVVSIAKK
YTSYGLTMMDLVQEGNIGLMRAVEKFDYTKGHKFSTYATWWIRQAITRAIADQSRTIRLP
VHMGEAISQVKRASHKLQQMMQREPTPEEIADAMGISSTKVRRTLEASMHPLSLEMPVGQ
EGEGRMGDFIEDDRISTPAEAAAASMLREQLEEVLQKLPERERKIIQLRYGLKDGRYRTL
EEVGMEFGITRERIRQIEAVALRKLRHPHLGKKLRGYLD
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaaggcagatccatgaccaccgagatcgtggagcagacacggcaggcgtgggcg
caaacgctcgaatacctcctcgacattgggcgcacacgcgggttcctcacctataacgaa
attcttgaagcgcttccccaacccgaatatcacgttgccgatgttgatcaattgtacgct
tcattgcaggcggaaggcattcgggtggtcgagaccccgctcgatatgagcgaccacggc
gcggtcggcgatgatgaattgctggcggaaatgccggacctgaccgatgtggcgctcgat
gatccggttcggatgtatttacaggagattggtcaggtgccattgttgtcggcagagcag
gaagtgatgctggcaaaggcgatggaggccgggcatcgcgcccggcgcgcgcttgagtgc
gaggagtatagctcctggcaggaacggatgatgtacgaacagcaggttgcacaggggaat
gaagcgcgtcagcacctgatccaggccaatctgcgtctggtcgtctcgatcgccaaaaaa
tatacgtcgtatggtctgacgatgatggacctggtgcaggaaggcaatatcggacttatg
cgtgcagtcgaaaagttcgactataccaaggggcacaagttctctacctacgccacctgg
tggattcgccaggcgatcacgcgcgccatcgccgatcaaagccgcaccatccgcctgccg
gtgcatatgggtgaggcgattagtcaggtcaagcgcgcctcgcataaacttcagcagatg
atgcagcgcgaaccgacaccggaagagatcgccgatgcgatgggcatcagttcgacgaag
gtgcgtcgcacgctcgaagcctcgatgcacccgctatcgctggaaatgccggttgggcag
gaaggcgagggccgtatgggcgactttatcgaagatgatcgtatctcgaccccggctgaa
gctgcagctgcatcgatgctgcgcgagcaactcgaagaggtgctgcaaaaactccctgaa
cgggaacggaagattattcagttgcgctatgggctgaaggatggtcgttaccgcacactg
gaagaagtcggtatggaatttggcatcacccgcgagcgcatccggcagatcgaagccgtg
gcgctgcggaaattgcgccatccccaccttggcaagaagttgcgcggttacctcgattga
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