Rouxiella chamberiensis: O1V66_21400
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Entry
O1V66_21400 CDS
T08677
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
rcb
Rouxiella chamberiensis
Pathway
rcb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rcb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
O1V66_21400 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rcb03400
]
O1V66_21400 (recD)
Enzymes [BR:
rcb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
O1V66_21400 (recD)
DNA repair and recombination proteins [BR:
rcb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
O1V66_21400 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
RecD_N
AAA_30
UvrD_C_2
Helicase_RecD
Viral_helicase1
SH3_13
AAA_11
AAA_22
SLFN-g3_helicase
UvrD-helicase
nSTAND3
UvrD_C
AAA_16
CbiA
PhoH
AAA_28
AAA_33
DEAD
T2SSE
MukB
SRP54
DUF87
TrwB_AAD_bind
FtsK_SpoIIIE
AAA
Zeta_toxin
DO-GTPase1
NTPase_1
ABC_tran
ResIII
Motif
Other DBs
NCBI-ProteinID:
WAT01234
LinkDB
All DBs
Position
4579875..4581752
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AA seq
625 aa
AA seq
DB search
MNALYEQAITSGALRPLDVQFARMLAQEDAAMMLAVACLSAEAGRGHVCLRIDELLPDQL
FEGRFPALAHAMWQAAGSPDAQGWLSLLQQHPSVGDGTQATPLVLQQQRLYLQRMWQDEG
RVATFFIDDGQSLHVNLAEQGGTLAVDEQRLREVLDQLFGPASSDSIDWQKVAAAVAVTR
RIAIISGGPGTGKTTTVAKLLAALVKLQPDRLRIQLAAPTGKAAARLTESLGQASRQLDL
TEAQRAQFPEEASTLHRLLGAQPNSQRMRYHQGNPLHLDVLVVDEASMVDLPMMARLIAA
LPAQARVIFLGDRDQLASVEAGAVLGDICRFAEQGYSPARAAQLMRLTGCAAEGVELAQP
ASVRDTLCLLRKSYRFDASSGIGVLAAAVNAGDSQAARRVLAQSLPDVGSFPLNETEDFK
TLLDACVSSYRPYLQAVAEKADPAEILRAFGEFQVLCALREGPFGLAGLNERIEQMLQRH
GLIRRPTALGGRWYAGRPVMISRNDSALGLFNGDIGIALRSESGELRVYFQLPDGQIKSV
QPSRLPIHDTAYAMTVHKSQGSEFDHTLLVLPNHFLPVLTRELVYTAITRAKRRLSMYSS
EKVLSMAIRTPTQRRSGLVERLTES
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgaatgccctttatgagcaggcgataacatcaggcgctctgcgccctctggacgtacag
tttgcccgtatgctggcgcaggaagacgctgcgatgatgctggccgtggcctgtctgagt
gccgaagcggggcgcggacacgtctgtcttcgcatcgacgaactgctgcccgaccagctg
tttgaggggcgcttcccggcactggctcatgcaatgtggcaggcggcaggatcacccgac
gcacagggatggctctcgctgctgcagcagcatccctccgtgggcgacggcactcaggca
acgcctctggtcttgcagcaacagcgcctatatttacagcggatgtggcaggacgaaggc
cgcgtcgcgacctttttcatcgatgacggccagtcgctgcacgtgaatcttgcagaacag
ggcggcacgcttgcagtagacgaacagcgcctgcgtgaagtgctggatcaactgttcgga
ccggccagttccgacagcatcgattggcagaaagtggccgccgccgtggccgtaacacgt
cgtattgccattatttccggcgggccgggcaccggtaaaacaacgaccgtcgccaagctg
cttgcggcgctggtcaagttgcagcccgatcgcctgcgcattcagctggcagcgccaacc
ggcaaagcggccgcgagactgaccgaatcgctggggcaggcgagtcgtcagctcgacctg
accgaagcccagcgcgcgcagtttccggaggaggcctcaaccttgcaccggttgctgggc
gcgcagcccaacagtcagagaatgcgctatcatcagggcaatccgctgcacctcgacgtg
ctggtcgtcgatgaagcctccatggttgatttgccgatgatggcgcgcctgatagcggca
cttcccgcacaggcacgtgtcattttcctgggcgatcgtgaccagttggcctccgtggaa
gcgggtgcggtgctgggcgatatttgccgttttgcggagcagggttacagtcctgcccgc
gcagcacagcttatgcgcctgacaggctgcgccgccgaaggcgtggagctggctcaacct
gccagcgttcgcgataccctctgcctgctgcgcaagagctaccgcttcgatgccagttca
gggattggcgtgctggcggctgcggtgaatgctggcgacagtcaggccgcgcgtcgcgtg
cttgcgcaatcactgcccgatgtcggcagtttcccgctcaacgaaacggaagacttcaag
acgctgctcgatgcctgcgtctcaagttatcgcccttatctgcaagccgtggcggagaaa
gccgatcccgccgagatcctgcgggcgtttggtgaatttcaggtgctgtgcgcactgcgc
gaagggccattcggtcttgcaggattaaacgaacgcatcgagcagatgttgcagcgccac
gggttaattcgtcgtcccactgcgcttggtggccgctggtatgccggaaggccggtgatg
ataagccgcaacgacagcgcgctcgggctgtttaacggcgatatcgggattgcgctacga
agcgaatccggtgagttgagggtgtatttccagttgcccgacggacagataaaatcggtg
caacctagccgtttgcctatccacgataccgcctacgcgatgacagtgcacaagtcccag
ggttccgaattcgaccacaccttgctggtgttgccgaatcatttcctgccggtgctgacc
cgtgaactagtatataccgccatcacccgcgccaaacgacggctgtcgatgtacagcagc
gaaaaagtcctgagcatggctatccgcacgcctacacagcggcgcagcggtctggtcgag
cggcttaccgaaagctga
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