Rickettsia canadensis CA410: RCA_02660
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Entry
RCA_02660 CDS
T01736
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
rcc
Rickettsia canadensis CA410
Pathway
rcc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rcc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RCA_02660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcc03019
]
RCA_02660
03016 Transfer RNA biogenesis [BR:
rcc03016
]
RCA_02660
Enzymes [BR:
rcc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
RCA_02660
Messenger RNA biogenesis [BR:
rcc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
RCA_02660
Transfer RNA biogenesis [BR:
rcc03016
]
Prokaryotic type
tRNA degradation factors
RCA_02660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
OB_RRP5_4th
S1_RRP5
KH-I_KHDC4-BBP
KH_2
KH_DUF2096_C
CTD9
Motif
Other DBs
NCBI-ProteinID:
AFB21099
LinkDB
All DBs
Position
602422..604665
Genome browser
AA seq
747 aa
AA seq
DB search
MFNEITKSVTWNGKVLELSTGKIARQADGSVTVKMGNSVLLCTAVVANTAKEGIGFFPLT
INYREMAYAVGKIPGGFFKREGKASEREVLVSRLIDRPIRPLFHPAFVNETQVTCTVLSY
DPETPVDILAIIGASAALALSPAPYLEIVAASKVGLINGEFVLNPTIELLKTSQLDLVVA
GTTESVMMVESEAHLLSEAQMLEAVKFGFESFQPVVKIIKELAEEAKRPKLEMQDLYPSV
LKNEIEQLFAKEIEQAFAIKSKQERSTSLDLISEKVITHFISDIENKKYNNYQIESALKS
VESDILRKEILEKNKRIDGRSTMDIRQIACEVGLLPSAHGSALFTRGETQSLVSSTLGTS
LDEQIVDNLEGEYKERFMLNYIFPPYSVNEAMPMKAPSRREVGHGKLAWRAINPILPNKV
QFPYSIRVVAETTESNGSSSMATVCGSSLALMQTGIPIKAPVAGIAMGLVKEGKKFAVLS
DILGDEDYFGDMDFKVAGTSEGITALQMDIKISGVDFKIMKVALEQARLGRLHILEQMNK
VISKPNSELSKNAPSTTTIKIDKDKIRDIIGPGGKIIKEICETSGAKIDISDDGTVSVYA
ADRNKLKIASDKIKAIAIEPEIGEIFNGTVTKILDSGAFINYLGNKDGFVHISEISEERI
DTVSSVVKQGDIVKVKLIGFDNKGKAKLTIKNADKDKSLNNPKPQNSINNAKENSEHVRC
DSIKKRAWNEDNNAETAEFITERKYFN
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atgtttaacgaaataactaagagtgttacatggaatgggaaagttcttgagcttagtaca
ggtaaaatagcacggcaggctgacggcagcgttacagtaaaaatgggtaattccgtttta
ttatgtacggcagtagtagctaacacagcaaaagagggtatcggtttttttcctttaaca
attaattatagagaaatggcatatgctgtcggtaaaatacctggtggtttttttaagcgt
gagggcaaagcatcagagagagaagttttagtatctcgtttaatagatagaccgattaga
ccattatttcatccggcttttgttaatgaaacacaagtaacttgtaccgtgctttcatat
gaccctgaaactccagtagatatacttgcaattattggtgcatcagctgcacttgctcta
tcccctgccccttatctagaaatagttgctgcaagtaaagttggtttaatcaatggtgaa
tttgttttaaatccaacaattgaattattaaaaacaagtcagcttgatttagtagttgca
ggaacaacagagtcagtaatgatggttgaatcggaagctcatttactctctgaagcacaa
atgctagaagctgtaaagtttggatttgaaagcttccagccagtagtaaaaataattaaa
gaactagcagaagaagctaaaagaccgaagcttgaaatgcaagatttatacccttctgta
ttaaagaacgaaattgaacagttatttgcaaaagaaattgaacaagcttttgctataaaa
tctaaacaggaacgtagcactagtttagacttaatttctgaaaaagttattacgcatttt
ataagcgacatagaaaataaaaaatataataattatcaaatagaatcagctttaaaatct
gttgaatcagatatattacgcaaagaaattttagaaaaaaataaacgtattgatggcaga
agtaccatggatataagacaaattgcctgtgaagtaggtttattaccttctgcacacggt
tcagctttatttactagaggcgaaacacaaagcttagtcagtagcacacttggaactagt
ttagatgaacaaatagttgataatttagagggtgaatataaagagcgttttatgcttaat
tatatcttcccgccctactccgtaaatgaggcaatgcctatgaaagcacctagtcgtcgt
gaagtcggacacggtaagctcgcatggcgtgctattaatccaatattacctaataaagta
caatttccttattctataagagttgtagctgaaactacagaatctaacggctcttcttca
atggcaaccgtatgtggtagttctcttgctttaatgcaaaccggtattccaataaaagca
ccggttgcaggtattgctatggggcttgttaaagagggtaagaaatttgccgtattatcg
gatattcttggagatgaggattatttcggtgatatggattttaaggttgcaggcactagt
gaaggaattactgcattacagatggatattaaaatatccggggtagattttaaaataatg
aaagtagctttagagcaagcacgactcggtcgtttgcatatacttgagcaaatgaataaa
gttatcagtaaaccaaatagcgaactaagtaaaaatgctccttctactactactataaaa
atagataaagataagattagagatattatagggccaggcggtaaaataataaaggaaatt
tgtgaaactagcggtgctaaaatagatataagcgatgacggtacagtttctgtttatgct
gcagatagaaataagctaaaaattgcctcagataaaattaaagctattgctatcgaacct
gagatcggtgaaatatttaacggtactgtaacaaaaatcttagattccggtgcttttatt
aattatttaggtaataaagacggttttgttcatattagtgaaatttcagaagaaagaata
gacacagttagcagtgttgtaaaacaaggcgatatagtaaaagttaagctaataggtttt
gataataaaggcaaagcaaaactaactattaaaaatgctgataaagataaatctctaaat
aatccaaagccacaaaatagtattaacaatgctaaggaaaattcagaacatgtgagatgt
gattctattaaaaaacgagcttggaatgaagataataatgctgaaacggctgaattcatt
acagaacgtaagtattttaattaa
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