Rhodospirillum centenum: RC1_1529
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Entry
RC1_1529 CDS
T00785
Symbol
rnr
Name
(GenBank) ribonuclease R, putative
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
rce
Rhodospirillum centenum
Pathway
rce03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rce00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RC1_1529 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rce03019
]
RC1_1529 (rnr)
03016 Transfer RNA biogenesis [BR:
rce03016
]
RC1_1529 (rnr)
Enzymes [BR:
rce01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
RC1_1529 (rnr)
Messenger RNA biogenesis [BR:
rce03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RC1_1529 (rnr)
Transfer RNA biogenesis [BR:
rce03016
]
Prokaryotic type
tRNA degradation factors
RC1_1529 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
RNase_II_C_S1
FaeA
Motif
Other DBs
NCBI-ProteinID:
ACI98933
UniProt:
B6IN36
LinkDB
All DBs
Position
1572348..1574627
Genome browser
AA seq
759 aa
AA seq
DB search
MEPTRRKKEAPFPSKDQVLEFIRESPTPVGKREIARAFHITGDARVLLKHLLKELEQEGA
VEKGAGRRMAPPAALPEVAVLVVTGIDTDGEALARPVNWTDEENPPPEIFMRPERRGHPA
LAPGDRVLARLSRISDRRYEARTIRRLDAGSTARIVGIYETGREGGRLRPADRRTRTEFV
ILPQNSEGARPGELVVAEVLPSSRMGLKQARVIERLGGLDDPRAVSLIAIHQNGIPTAFP
QAALDEAAAAAEPALEGRTDLRDIPLVTIDGADARDFDDAVHAEPDTDPANPGGWHLLVA
IADVCFYVTPGSALDRTAFERGNSCYFPDRVVPMLPEALSNELCSLKPGVNRGCLAVHLW
IDRDGTLKRHRFVRGLMRSAARLTYEQVQAARDGRPDETTGPLLERVIAPLYGAYEALAA
ARRRRGTLELDLPERKVALDEAGEIVRIDVRERLDSHRLIEEFMICANVAAAEALEARHA
PCLYRVHAEPARDKLEPLREFLDSLGYNLARGQVLAPAAFTRILEKAAGTPDSELISSVI
LRSQAQAVYQPDNIGHFGLALVKYAHFTSPIRRYADLIVHRSLVRAFGLGTGGLTEDEAD
RLDRIGDHISMTERRAAEAERDAMDRYVARYLADRVGATFTGKIGGVTRFGLFVTLTETG
ADGIVPISTLPDDFYDHVEAEHALVGRRWGRRYRLGTQVKVVLREADPVAGSLVFQLLDP
EDAALADSPAGPPRSRPRGRGQVAPPSTLDRPRPPRRGR
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
gtggaacccacgcgccgcaagaaggaagcccccttccccagcaaggaccaggtcctggag
ttcatccgggaaagtccgacccccgtgggcaagcgagagatcgcgcgggccttccacatc
acgggcgatgcgcgcgtcctgctgaagcacctgctgaaggagcttgagcaggagggtgcc
gtggagaagggggcgggccgccgcatggcaccgccggccgccctgcccgaggtcgccgtg
ctggtggtgaccggcatcgacacggacggggaggcgctggcccgccccgtgaactggacg
gacgaggagaacccgccgccggagatcttcatgcggccggagcggcgcggccacccggcg
ctggcgcccggcgaccgtgtgctggcccggctgagccggatctccgaccggcgctacgag
gcccgcaccatccggcggctggacgccggctcgaccgcccggatcgtcggtatctatgag
accgggcgcgaggggggacggctgcgcccggccgaccgccggacccggacggaattcgtg
atcctgccgcagaactccgaaggggcgcggccgggagaactggtcgtggcggaggtgctg
ccctcgtcccgcatggggctgaagcaggcgcgcgtgatcgagcggctgggcggcctggac
gatccgcgcgccgtcagcctgatcgccatccaccagaacggcatcccgaccgccttcccc
caggcggccctggacgaagccgccgccgccgcggagccggcgctggaggggcggaccgac
ctgcgcgacatcccgctggtcacgatcgacggggcggatgcccgcgacttcgacgacgcc
gtccatgccgaaccggacacggacccggccaatcccggcggctggcacctgctggtcgcc
atcgccgacgtctgcttctacgtgacgccgggatcggcgctcgaccgcacggccttcgag
cggggcaattcctgctacttccccgaccgggtcgtgccgatgctgcccgaagccctgtcg
aacgagctgtgctcgttgaagccgggggtgaaccgcggctgcctcgccgtgcatctctgg
atcgaccgcgacggcaccctgaagcgccaccgcttcgtgcgcgggctgatgcgctcggcc
gcgcggctgacctacgagcaggtgcaggcggcccgcgacggacgcccggacgagacgacc
ggccccctgctggagcgggtgatcgccccgctctacggcgcctacgaggcgctggcggcg
gcccggcggcggcgcggcacgctggagctggacctgcccgagcgcaaggtcgcgctggac
gaggccggagagatcgtccgcatcgacgtgcgcgagcgcctggacagccaccggctgatc
gaggagttcatgatctgcgccaacgtggccgccgcggaggcgctggaggcgcggcatgcg
ccctgcctctaccgcgtgcatgccgaaccggcgcgggacaagctggagccgctgcgggag
ttcctggacagcctgggctacaacctcgcccgcgggcaggtgctcgccccggccgccttc
acccgcatcctggagaaggcggccggcaccccggacagcgaactgatcagcagcgtgatc
ctgcgcagtcaggcgcaggccgtgtaccagcccgacaacatcgggcatttcgggctggcg
ctggtgaagtacgcccatttcacgagcccgatccggcgctatgccgacctgatcgtccac
cgctcgctggtgcgcgccttcgggctggggaccggcgggctgacggaggacgaagcggac
aggctggaccgcatcggggaccacatctccatgaccgagcgccgcgccgccgaggccgag
cgcgacgccatggaccgctatgtcgcgcgctacctggccgaccgcgtcggcgccaccttc
accggcaagatcggcggcgtcacccgcttcggcctgttcgtgacgctgacggagacggga
gccgacggcatcgtgccgatcagcacccttcccgacgatttctacgaccatgtggaagcc
gagcacgccctggtcgggcgtcgctggggccggcgctatcggctgggcacccaggtcaag
gtcgtgctgcgcgaggccgatccggtggcgggcagtctggtcttccagttgctggacccg
gaggacgccgcccttgccgacagcccggcagggcccccgcgttcccgcccccgcggccgc
gggcaggtcgccccgccctccacgctcgaccgtccgcgcccgcccaggcgcgggcgctga
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