Rhodospirillum centenum: RC1_1611
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Entry
RC1_1611 CDS
T00785
Symbol
rne
Name
(GenBank) ribonuclease, Rne
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rce
Rhodospirillum centenum
Pathway
rce03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rce00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RC1_1611 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rce03019
]
RC1_1611 (rne)
03009 Ribosome biogenesis [BR:
rce03009
]
RC1_1611 (rne)
Enzymes [BR:
rce01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
RC1_1611 (rne)
Messenger RNA biogenesis [BR:
rce03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RC1_1611 (rne)
Ribosome biogenesis [BR:
rce03009
]
Prokaryotic type
rRNA processing factors
RC1_1611 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ACI99013
UniProt:
B6INB6
LinkDB
All DBs
Position
1658234..1661341
Genome browser
AA seq
1035 aa
AA seq
DB search
MAKRMLVDATHPEETRVVVVSGNRLEELDFEIASRKQLKGNIYLAKVIRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYRIPVADREALLREQEREYEAGDREPASVEQVEDAAAGIEET
SAGAVPVDEIGGAAPSLMDEGTPDGSSAEDGPEGESPLSAGDPEDGSDFAGEGAEDAGPD
GRATELRHSNGREGRRERRAAAAADGGETVEEDTEEERRRRPRPLKSYKIQEVIKRRQIL
LVQVTKEERGNKGAALTTYLSLPGRYCVLMPNTPRGGGISRKITNPADRKRMKELLEGLD
VPQGMSVILRTAGIERSKPEIKRDLEYLMRLWDSIRELTLQSVAPALIYEEANLIKRSIR
DLYASDIDEVIVEGEQGYRTAKDFMRMLMPSHAKKVQPYKDDIPLFHRFQVEGAIETMFD
PVVQLRSGGYIVINQTEALVAIDVNSGRSTKERNIEETALRTNLEAAEEIARQLRLRDLA
GLIVIDFIDMEEARNNASVEKRLKEAMKADRARIQLGRISPFGLLELSRQRLRPSLQEIN
FERCPHCAGTGLVRSVESAALAVLRAIEEEGIRRRSAEITVTAAASLVLYILNQKRESLT
AIERRYGLRVYLAADDSLTPPAHRLERLRARQPGDDLPVAQTTVSAEKVYAETDRALEVE
EAEEAEELEEETEESAATAPQTAEERSQGDRDSRRRRRRRRRRPGEARFGDAEATTLPAD
AETAERTEDAGAEGDEDEDADDDAGEEAGAEGSVSATGDDAQSLRKKRRRGKRGGRRRAR
QRIDGLPEIPGETLAEGEEAEGDDTEDGGAEDGGAGEAAEPSGALAVAGEGPALTGTETT
VSEPVEPSPDAGVPGEAVTTGTVVAAAEPATAGTEPTAKPKRSRAPRKKAAETPAAAAEA
TPVAEAAPAEAAEAEEKPKAKRTRAPRKKTAETPAAAAEATPVAEAAPAEAAAAEEKPKA
KRTRAPRKKTAAAETPAADTVTEAVTAVDTDMATAVTPAVETPAETSAAPAPVEAAPQAV
VNPPIEAPKKGWWRR
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcgcatgcttgtggacgccacacacccggaggagacccgggtcgtcgtggtc
agcggcaacaggctggaggaactcgatttcgagatcgccagccggaagcaactcaagggc
aacatctatctggcgaaggtcatccgggtggagccgtcgctccaggcggccttcgtggag
tatggcgggaaccggcacggtttcctggccttctcggaaatccacccggactactaccgt
atcccggtggcggaccgtgaagccctcctgcgcgaacaggagcgcgagtacgaggccggc
gaccgtgagcccgcctcggtcgaacaggtcgaggatgccgccgccggtatcgaggagacc
tcggccggcgcggtgccggtggacgagatcggcggcgccgccccctccctgatggatgag
gggaccccggacggcagcagcgccgaggacggccccgaaggagaaagccccctgtccgcc
ggcgatccggaggatggcagcgacttcgccggagagggcgcggaggatgcggggccggac
ggccgcgcgacggaactgcgccactccaacggccgtgaaggccggcgcgagcgccgcgcc
gccgccgcggccgacggcggcgagaccgtcgaggaggatacggaggaggaacgccgccgg
cgcccccgcccgctgaagtcctacaagatccaggaggtgatcaagcgccggcagatcctg
ctggtccaggtcaccaaggaggagcgcggcaacaagggtgccgccctgaccacctacctg
tcgctgcccggccgctactgcgtgctgatgccgaacacgccgcgcggcggcggcatctcg
cgcaagatcaccaaccccgccgaccgcaagcgcatgaaggagctgctggagggcctggac
gtgccgcagggcatgtcggtcatcctgcgcaccgccggcatcgaacgctccaagccggag
atcaagcgcgacctggaatacctgatgcgcctgtgggacagcatccgggagctgaccctg
cagtcggtcgccccggcgctgatctacgaggaggcgaacctcatcaagcgttccatccgc
gacctctacgcctcggacatcgacgaggtgatcgtggagggcgagcagggctaccgcacc
gccaaggatttcatgcggatgctgatgcccagccacgccaagaaggtgcagccctacaag
gacgacatccccctgttccaccgcttccaggtggagggcgcgatcgagaccatgttcgac
ccggtcgtgcagttgcgctcgggcggctacatcgtcatcaaccagaccgaggcgctggtc
gccatcgacgtcaactcgggccgctccaccaaggagcgcaacatcgaggagacggcgctg
cgcaccaatctggaggcggcggaggagatcgcccgccagctccgcctgcgcgacctggcc
ggcctgatcgtcatcgacttcatcgacatggaggaggcgcgcaacaacgcctccgtcgag
aagcggctgaaggaggcgatgaaggcggaccgcgcccgcatccagctcggccgcatctcg
cccttcggcctgctggagctgtcgcgccagcgcctgcgcccgtcgttgcaggagatcaac
ttcgagcgctgcccgcactgcgccggcaccggcctcgtccgctcggtggagagcgccgcc
ctggccgtgctgcgcgccatcgaggaggagggcatccgccgccgctccgccgagatcacg
gtgaccgcggcggcctcgctggtcctctacatcctgaaccagaagcgcgagagcctgacc
gccatcgaacggcgctacggcctgcgcgtctatctggccgccgacgacagcctgaccccg
ccggcccaccggctggagcggctgcgcgcccgccagcccggcgacgacctgccggtggcg
cagacgacggtcagtgccgagaaggtctatgccgagaccgaccgggcgctggaggtcgag
gaggccgaagaagccgaggaactggaggaggagacggaggagagcgccgcgaccgccccg
cagaccgccgaggagcggtcgcagggtgaccgcgacagccgccgccgccgccgccggcgc
cgtcgtcgtccgggcgaggcccgcttcggtgacgccgaggcaaccaccctgcccgccgat
gcggaaacggccgaacggaccgaggacgccggtgcggagggcgacgaggacgaggacgcc
gacgacgacgcgggcgaggaagccggggccgagggctccgtctccgcaaccggcgacgac
gcccagtccctgcgcaagaagcgccgccgcggcaagcggggcggccgccgccgggcgcgt
cagcggatcgacggtctgccggagatcccgggcgagaccctggccgaaggcgaggaagcc
gagggcgacgacaccgaggatggcggggccgaggatggcggggccggagaagccgccgaa
ccgtccggggcgctggccgtcgccggagagggtccggccctgaccgggaccgagacgact
gtcagcgaacccgtcgagccgtcaccggacgccggagtcccgggcgaagcggtgacgacc
ggaaccgtcgtcgcagccgccgaaccggcgaccgccggcacggaaccgacggcgaagccc
aagcgcagccgcgccccgcgcaagaaggccgcggaaacgccggcagcggcggccgaggca
actcccgtggcggaagcggctccggccgaagccgccgaagcggaggagaagccgaaggcc
aagcgtacccgcgccccgcgcaagaagaccgcggaaacgccggcggcggcggccgaggca
actcccgtggcggaagcggctccggccgaagctgctgcagcggaggagaagccgaaggcc
aagcgtacccgcgccccgcgcaagaagaccgccgccgcggaaacgccggcagcggacacg
gtgacggaagcggtcacggcagtggacacggacatggccacggcggtgacgccggccgtg
gagaccccggcggaaacgtcggcggctcccgccccggtcgaagccgcgccgcaggccgtg
gtcaacccgccgatcgaagcgccgaagaagggctggtggcgccgctga
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