Rhodospirillum centenum: RC1_2006
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Entry
RC1_2006 CDS
T00785
Symbol
rpoD
Name
(GenBank) DNA-directed RNA polymerase, sigma subunit RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
rce
Rhodospirillum centenum
Pathway
rce02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rce00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
RC1_2006 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rce03021
]
RC1_2006 (rpoD)
Transcription machinery [BR:
rce03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RC1_2006 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
EFhand_Ca_insen
Motif
Other DBs
NCBI-ProteinID:
ACI99399
UniProt:
B6INX9
LinkDB
All DBs
Position
complement(2057390..2059336)
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AA seq
648 aa
AA seq
DB search
MATKATQSAEVTDTREDEANGPLMDNMAIAVKKMIQRGKERGYVTYDELNAALPPDQSSS
EQIEDTMAQLSEMGINVVEGEEPEDGQDASGDGEGRVSGNLDDDDIGRTDDPVRMYLREM
GSVELLSREGEIAIAKRIEAGREMMIGAICESPLTIRAIIEWHQSLMEGKMLLRDIIDLD
ATYGIDPESGEPTGEDLSAVEAESEEEETPERPEGAEGEPEGGDEEGNISLSAMEAELKP
KVIETFARIEETYEKLHKVQEQRLAVLQRGEELPKGSDKKYDKLKAELTDLVNSVRLNNA
RIEQLVEQLYGLNRKLLGYEGKLLRLATDCKIKREDFLHHYYGSELDPNWLERCRGLSKS
WGRFADKSSVEVGRVREAISEVADQVRLPIGEFRRIVSTVQKGEKEASRAKKEMVEANLR
LVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIAD
QARTIRIPVHMIETINKLVRTSRQMLHEIGREPTPEELAERLMMPLEKVRKVLKIAKEPI
SLETPIGDEEDSHLGDFIEDKNAVLPLDAAIQANLRETTTRILATLTPREERVLRMRFGI
GMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDT
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atggccacgaaagcgacgcaaagcgccgaagtgacggatacccgggaggacgaagccaac
ggtcctctcatggataacatggcgatcgccgtcaagaagatgatccagcgcggcaaggag
cgcggatacgtcacctatgacgagctgaacgccgccctgccaccggaccagtcgtcctcg
gaacagatcgaggacacgatggcccagctcagcgagatgggcatcaatgtcgtcgagggc
gaagagcccgaggacggacaggacgcctcgggcgatggcgagggccgcgtctcgggcaac
ctggacgacgacgacatcggccgcaccgacgacccggtgcggatgtatctgcgcgagatg
gggtcggtcgagctgctgagccgcgagggcgagatcgccatcgccaagcgcatcgaggcc
ggccgcgagatgatgatcggcgcgatctgcgaatcgccgctgaccatccgcgccatcatc
gagtggcatcagtccctgatggaagggaagatgctgctgcgcgacatcatcgacctggac
gccacctacggcatcgaccccgagtcgggcgaaccgacgggcgaggacctctccgccgtc
gaagcggagtccgaggaggaggagacgcccgagcgcccggaaggggccgagggcgagcct
gagggcggcgacgaagagggcaacatctccctctcggccatggaggccgagctgaagccc
aaggtcatcgagaccttcgcccggatcgaggagacctacgagaagctgcacaaggtgcag
gaacagcgcctcgccgtcctgcaacggggcgaagagctgccgaagggctccgacaagaag
tacgacaagctgaaggcggagctgacggatctcgtcaactccgtgcgcctgaacaatgcc
cggatcgagcagctcgtcgagcagctctacggcctgaaccgcaagctgctgggctacgag
ggcaagctgctgcggctggcgaccgactgcaagatcaagcgcgaggacttcctgcatcat
tattacggcagcgagctggacccgaactggctggaacgctgccgtggcctgagcaagagc
tggggccggttcgccgacaagtcctcggtcgaagtgggccgcgtgcgcgaggccatctcc
gaggtggccgaccaggtgcgcctgccgatcggcgagttccgccgcatcgtctccaccgtc
cagaagggcgagaaggaggcgagccgcgccaagaaggagatggtggaggcgaacctccgc
ctcgtcatctccatcgccaagaagtacacgaaccgcggtctgcagttcctggacctgatc
caggagggcaacatcggcctgatgaaggcggtggacaagttcgagtaccgccgcggctac
aagttcagcacctacgcgacctggtggatccggcaggcgatcacccgctcgatcgccgat
caggcccgcaccatccgcatccccgtgcacatgatcgagacgatcaacaagctggtgcgc
acctcgcgccagatgctgcacgagatcgggcgcgagccgacgccggaggaactggccgaa
cggctgatgatgccgctggagaaggtgcgcaaggtcctgaagatcgccaaggagccgatc
tccctcgaaacgccgatcggcgacgaggaggattcacacctcggcgacttcatcgaggac
aagaacgccgtcctgccgctggacgccgccatccaggcgaacctgcgcgagacgacgacc
cgcatcctcgccaccctgaccccgcgtgaggagcgcgtgctgcgcatgcgcttcggcatc
ggcatgaacaccgaccacacgctggaagaggtcggccagcagttcagcgtcacgcgcgag
cgtatccgccagatcgaggcgaaggccctgcgcaagctcaagcacccctcgcgttcgcgc
aagctgcggagcttcctggatacgtga
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