Rhodospirillum centenum: RC1_3142
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Entry
RC1_3142 CDS
T00785
Name
(GenBank) metallo-beta-lactamase superfamily
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
rce
Rhodospirillum centenum
Pathway
rce03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rce00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RC1_3142
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rce03019
]
RC1_3142
Messenger RNA biogenesis [BR:
rce03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RC1_3142
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B_2
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
ssDNA-exonuc_C
Motif
Other DBs
NCBI-ProteinID:
ACJ00507
UniProt:
B6IW33
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All DBs
Position
complement(3224534..3226021)
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AA seq
495 aa
AA seq
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MTFLHGRRAAPRGTAPKRQRRSAPARTPETGAGRTIPGPVPGADEILFLPLGGCSRIGMN
MTLYGHAGKWLIVDAGVAFLGDDQPGLDAVMADPTFIEERMADVVGLVVTHAHEDHVGAI
QHLWPRLDCPIYATDFAAHVIRERLKETGTTRQVRLHPLPIGGEIALGPFRVQTIAVTHS
IPEPVALAIHTAAGTILHTGDWKFDDSPLVGHTTDVEALRRLGDEGVLAMLCDSTNSMVE
GSTASEAKAHAGLTAAFAGRKGTIAVTGFASNVHRMKAVALAAKANGRRVVLAGRSLLRM
EKAARACGYLEDIPEFLSLDQAASLPRRELVLLCTGSQGEERAAMSRIARGEHRSLRLAK
GDTVIFSARAIPGNEEAIAAVVRHLETAGVEVLTPSDAPVHVSGHPAREDLKRMYGLVRP
RFAVPVHGTLEHLEAHARLARSCGVERALVPEDGDVIRLAAKGTAVVGRVDPKRLAHDGR
DLLPWSPEEDLALAA
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgacattcctgcatgggcggcgcgctgcgccgcgtgggaccgcgccgaagagacagcgc
cggtccgctccggcccgcacccccgagacgggggccggccgcacgatcccgggtccggtc
ccgggcgccgacgagatccttttccttccgctgggcggctgttcccgcatcggcatgaac
atgacgctgtacggccacgccggcaaatggctgatcgtggacgcgggcgtcgccttcctg
ggcgacgaccagcccggcctggacgccgtgatggccgatccgaccttcatcgaggagcgg
atggccgacgtggtcgggctggtggtgacgcatgcccatgaggaccatgtgggcgccatc
cagcacctctggccgcgcctcgactgcccgatctacgccaccgacttcgccgcccacgtc
atccgcgagcggctgaaggagaccggcacgacccggcaggtgcgcctgcacccgctgccg
atcggcggcgagatcgcgctgggcccgttccgggtgcagacgatcgccgtcacccactcc
atcccggagccggtggcgctggccatccacacggcggcgggcaccatcctgcacaccggc
gactggaagttcgacgacagcccgctggtcggccacaccaccgacgtggaggcgctgcgc
cggctgggcgacgagggcgtgctggcgatgctgtgcgacagcaccaacagcatggtcgag
ggcagcacggcgtcggaggcgaaggcccatgccgggctgaccgccgccttcgccgggcgc
aagggcaccatcgccgtcaccggcttcgccagcaatgtccaccgcatgaaggcggtggcg
ctggcggccaaggccaacggccgccgggtcgtgctggccggccgctcgctgctgcgcatg
gagaaggcggcgcgggcctgcggctatctggaggacattcccgagttcctgagcctggac
caggcggcatcgctgccgcggcgggagctggtgctgctctgcaccggcagccagggcgag
gagcgcgccgccatgagccgcatcgcccgcggcgagcaccgctcgctgcggctggcgaag
ggcgacacggtgatcttctccgcccgcgccatccccggcaacgaggaggcgatcgccgcc
gtcgtccgccatcttgagacggcgggcgtggaggttctgacgccctcggacgcgccggtc
catgtctccggccatccggcgcgggaggacctgaagcggatgtacgggttggtccggccc
cgcttcgccgtgcccgtccacggcacgctggagcatctggaggcgcacgcccgtctggcc
cggagctgcggcgtcgaacgcgccctggtgccggaggacggcgacgtcatccggctggcc
gcgaagggcacggccgtcgtcggccgggtggacccgaagcgtctggcccatgacgggcgg
gacctgctgccctggtcgcccgaggaggatctggcgctggcggcctga
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