Rosistilla carotiformis: Poly24_16180
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Entry
Poly24_16180 CDS
T09894
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rcf
Rosistilla carotiformis
Pathway
rcf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Poly24_16180 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcf03019
]
Poly24_16180 (rhlE)
Enzymes [BR:
rcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Poly24_16180 (rhlE)
Messenger RNA biogenesis [BR:
rcf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Poly24_16180 (rhlE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
CMS1
Utp25_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QDV67913
UniProt:
A0A518JQU5
LinkDB
All DBs
Position
complement(2099381..2100838)
Genome browser
AA seq
485 aa
AA seq
DB search
MPSDCSVTSLLGTTLKTFQELDLIAPLQRALAEENYEIPTPIQAQTIPAALDQRDVLGCA
QTGTGKTAAFALPILNRLGANPGQTQPGRPRVLVLAPTRELAIQIGDSFETYGKHLKLRH
ALVYGGVGQHKQVRDMQRGVHVLVATPGRLLDLMNQGHIHLDRLEVFVLDEADRMLDMGF
LPDLKRIVAKLPARRQSLFFSATMPPKIVELTQRLLRDPVSVNVTPKTTSVERIEQRVIH
AERNDKQSMLRKILSGDDVDRAIVFTRTKRGANTLAEKLVKSGISSAAIHGNKSQGARQR
ALDAFRRRQVQVLVATDVAARGIDIDGVTHVVNFDLPTEPESYVHRIGRTGRAGAEGLAI
SFCTAAERGELHAIEKLIGQKLQVSGEQPKPVTAAERHEMRSTTRRPGGSRRNAGASNGT
AASQQPRSGKPRANKPRSNKLPAAAAAANAPQNGASATIAAAKAAAKPKPKGKRPRPASM
WAEVV
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgcccagcgactgttccgtgacatccttgttaggaaccactttgaaaactttccaagaa
ctcgacctgatcgctcctttgcaacgcgctttggccgaagaaaactacgaaattcccaca
ccgatccaagcgcaaacgatccctgcggcactcgaccagcgcgacgtgctgggatgcgcc
cagaccggcaccggcaagaccgccgcctttgcgctgccgatcctgaaccgtttgggtgcc
aatcccggacaaacgcagcccggacggccgcgtgtgctggttcttgctccaacacgcgaa
ctggcgatccagatcggggacagctttgagacctacggcaagcacctgaagcttcgccac
gctttggtttacggcggcgtcggtcagcacaaacaagttcgcgacatgcaacgtggcgtc
cacgttctcgtggcaacgcccggccgtttgttggatttgatgaaccaagggcatatccat
ttggatcgcttggaagtctttgtgctcgacgaagccgaccggatgctcgacatgggcttc
ctgcccgacctgaagcggatcgtcgccaaactgcccgcacgacgccaatcgctcttcttc
tcggccacgatgccgccgaagatcgtcgaactgacccagcgtttgttgcgcgatccggtt
agcgtcaacgtaactcctaagacgacaagcgttgaacgcatcgaacagcgcgtgatccat
gccgaacgcaacgacaagcaatcgatgctgcgtaagatcctctcgggcgacgatgtcgac
cgcgcgatcgtcttcacgcggaccaagcgtggcgccaacacgttggcggaaaaacttgtc
aagagcgggatttcatcggctgcgatccacggcaacaaatcccaaggcgcacgccagcgg
gctttggatgccttccgtcgtcgccaggtccaagtattggtcgccaccgacgtggccgca
cgcggaatcgatatcgacggggtcacacacgtcgtgaattttgatctgccaaccgaacca
gaatcctatgtgcatcgcatcggtcggaccgggcgtgcgggagccgaagggctggcgatc
tcgttctgcaccgctgccgaacgtggcgaattgcacgcgatcgagaaattgattgggcaa
aagctgcaggtcagtggcgaacagcccaagccggtcacggccgccgagcgtcacgaaatg
cggtcgaccacgcgtcgcccgggtggttcgcgacggaatgccggtgcgtccaatggcacc
gcggcgtcccaacaaccgcgctcgggcaagccgcgtgcgaacaaaccacgctcgaataaa
ctgcccgccgctgccgctgccgcaaacgcaccacaaaacggtgcgtcggcgaccatcgct
gcagcaaaagctgccgcgaagccaaagcctaagggcaaacgtcctcgtcccgcaagcatg
tgggccgaagtggtatga
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