Rosistilla carotiformis: Poly24_30560
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Entry
Poly24_30560 CDS
T09894
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
rcf
Rosistilla carotiformis
Brite
KEGG Orthology (KO) [BR:
rcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rcf03016
]
Poly24_30560 (rtcB)
Enzymes [BR:
rcf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Poly24_30560 (rtcB)
Transfer RNA biogenesis [BR:
rcf03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Poly24_30560 (rtcB)
Prokaryotic type
tRNA splicing ligases
Poly24_30560 (rtcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
QSOX_Trx1
Motif
Other DBs
NCBI-ProteinID:
QDV69341
UniProt:
A0A518JUW4
LinkDB
All DBs
Position
complement(4061835..4063232)
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AA seq
465 aa
AA seq
DB search
MKTRELNNLGIPKGIAMQAAVEAVRNASAQGLKRPELRTAIAAIVEDPASAKDDPLWGSL
ADALQTVFSAQDRYIGRDEPAPWRQWGDGLESGAVAQMVDACKLPVTVSGALMPDAHLGY
GLPIGGVLATKDCVIPYAVGVDIACRMKMTVLDMPVETLDTNQDRLRNAIERETQFGIGA
SFRKRRQHEVMDADWRVSPITFQNKDKAWKQLGTSGSGNHFVEFGVLTLPADDLGLAAGT
YLALLSHSGSRGTGASVCAHYSSVAKATHPELPRELQNLAWLNLDTQEGQEYWNAMNLMG
EYAAANHACIHREIASHLGVEVLLDVENHHNFAWRESHGGEDLIVHRKGATPAGRGVLGI
IPGSMGTPGYVVRGKGVEASLLSASHGAGRKMSRTAAKKQFRWKEVKKFLDDRGVTLMSA
GLDEVPMAYKDIDQVMASQHDLVETVARFDPRLVKMAEAGERPED
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgaagacgcgtgaactgaacaacttgggaattccaaaagggatcgcgatgcaagcggct
gtcgaagcggtccgcaacgcgtcggcccagggcttgaagcgacctgaactacgaacggcg
atcgcggcaattgtcgaagaccccgcgtcggcgaaggacgatcctctttggggatcgttg
gccgatgctttgcagaccgtcttctcagctcaagaccgttacatcggtcgcgacgaaccc
gctccctggcgtcagtggggggacggtctggaatcgggtgccgtggcacagatggtcgac
gcctgcaagctgccggtaaccgtatcgggtgccctgatgcccgacgcgcacttgggttac
ggcctgccgatcggtggcgttctggcgacgaaggactgcgtgattccttacgcggtcggc
gtcgacatcgcctgccggatgaagatgaccgttttggatatgcctgtcgaaacgctcgat
accaatcaagatcgattgcgaaatgcgatcgagcgggaaacgcagttcgggatcggtgcg
agcttccgtaagcgacggcaacacgaagtgatggatgccgattggcgcgtctcgccgatc
acattccagaacaaggataaggcgtggaaacaattgggaaccagcggcagcggaaaccac
ttcgtggagtttggcgtcctgacgctgccggcggacgatctgggattggcagccggaacg
tacctggcgcttttgagccacagcgggtcgcggggaacgggagcctcggtttgcgcccac
tacagcagtgtggccaaagcgacgcacccggaactgccacgcgaactgcagaaccttgcc
tggttgaacttggatacgcaggagggccaagagtattggaacgcgatgaatttgatgggg
gaatacgctgcggccaaccacgcctgcatccaccgtgaaatcgcaagccacttgggagtc
gaagtcttgttggatgtcgagaaccatcacaactttgcctggcgagaatcgcatggcgga
gaggatctgatcgtccaccgcaagggagcgacgcccgcgggccgaggcgtgttgggaatc
atccccggttcgatggggactcccggatacgtggtccgcggaaaaggtgtcgaagcgtcg
ctgttaagcgcgtcgcatggtgccggtcgcaagatgagtcgcaccgctgcgaagaagcag
ttccgatggaaagaggtgaagaagttcctcgacgatcgcggcgtgacgttgatgtcggcc
ggactggatgaagtcccgatggcctacaaagacatcgaccaagtgatggcgtcgcagcac
gatctggtcgaaaccgtcgcccgcttcgatccgcgtttggtcaagatggccgaagcggga
gaacgtccggaggactga
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integrated database retrieval system
