Reichenbachiella carrageenanivorans: N7E81_00685
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Entry
N7E81_00685 CDS
T09654
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rcg
Reichenbachiella carrageenanivorans
Pathway
rcg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rcg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N7E81_00685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcg03019
]
N7E81_00685
Enzymes [BR:
rcg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
N7E81_00685
Messenger RNA biogenesis [BR:
rcg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
N7E81_00685
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
RCN2_N
Cas3-like_C_2
DUF34_NIF3
UvrD-helicase
ERCC3_RAD25_C
AAA_22
Helicase_C_2
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
UXX79626
UniProt:
A0ABY6D0E2
LinkDB
All DBs
Position
complement(161991..163271)
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AA seq
426 aa
AA seq
DB search
MANNIKNFSDFKFNKQVLSAITDAGYLSPTPIQQKAIPLVLAGHDVMGIAQTGTGKTAAF
VLPLLMKLKYAQGNDPRALILAPTRELAIQINENIKKYTTYVDLRYTAVYGGTGMKVQEE
KLKEGVDILVATPGRLMDLYRKGAFGTKQIKTLVIDEADKMMDMGFMPQIRQLLEVIPVK
RQNLLFSATMSAIVENLSAEFLEFPEKVEVTPQSSTVDTIAQSLYFVPNFKTKINMLGYL
LEQEEMSRIIIFVKTKANADNIYKYIERKVTKSVKVIHGNKAQNTRLNSIDAFKNGEIKV
LVATDVAARGLDVSMVSHVINFDVPLIYEDYVHRIGRTGRAEQTGIAITFANQAEAYHIK
QIEKLIDKKIKELSIPVEVEVEKTPFIEQQEQLREIDYRKKKLDPDYKGAFHDKKGKNIK
VTKKRR
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atggcgaataacatcaaaaatttctcagattttaagtttaataaacaggtgctcagtgca
attactgacgctggctatctctcacctactcctatacagcagaaggctattccactcgtg
ctggcaggccacgatgtgatgggcatagcccagactggtacgggtaagacggccgctttt
gtattgcccttgctaatgaaactgaaatatgcacaaggtaacgatccacgagcgctgata
ttggcacctactagagagttggctattcagatcaatgagaatattaagaaatacacgact
tatgtagatttgagatatactgcagtatacggaggtacgggtatgaaagtccaagaagaa
aaactgaaggagggtgtagatatactggtggcgacgccaggtagactgatggatttgtat
cgtaagggggcttttggtactaagcaaattaaaacactggtgattgatgaagcagataaa
atgatggacatggggtttatgccacagattcgtcagttacttgaggttatccctgtcaaa
cgccagaatctcttgttttcggcaacgatgtctgctattgtagaaaatctttctgctgag
tttttagagtttcccgaaaaggtcgaagtgactccgcagtcctctaccgtagatacgatt
gcacagtccttgtattttgtgcctaattttaagacgaagatcaacatgcttggttatctc
ttggagcaagaggaaatgagtagaatcatcatttttgtaaagacgaaggcgaatgcggac
aatatttacaagtatatcgagcgcaaagtgactaaatctgtgaaagtaatccatgggaat
aaggcgcagaataccaggctcaattccatcgatgcctttaaaaatggcgaaataaaagtg
ttggtagctacagatgtggctgcacgtggtttggatgtaagtatggtgtctcatgtgatt
aattttgatgtgcctctgatttatgaggattatgtacatcggataggtcgcacgggacgg
gctgagcaaacaggtatagcgatcacatttgccaatcaagcggaggcttatcatatcaag
cagatagagaagttaattgataaaaaaattaaagagctatccatccctgtagaagtagaa
gtagaaaagacgccatttattgagcaacaagaacaattaagggaaatagattatcgtaaa
aagaaactagatccagattacaaaggcgcttttcatgataaaaaaggaaagaatatcaag
gttacaaaaaagaggagataa
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