Reichenbachiella carrageenanivorans: N7E81_03825
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Entry
N7E81_03825 CDS
T09654
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
rcg
Reichenbachiella carrageenanivorans
Pathway
rcg02020
Two-component system
rcg02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rcg00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
N7E81_03825 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
N7E81_03825 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rcg03021
]
N7E81_03825 (rpoN)
Transcription machinery [BR:
rcg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
N7E81_03825 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
SF3b1
HTH_12
Motif
Other DBs
NCBI-ProteinID:
UXX80227
UniProt:
A0ABY6D245
LinkDB
All DBs
Position
complement(968867..970291)
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AA seq
474 aa
AA seq
DB search
MQNLSLIQTLGQKLSPQQIQFIKLLQVPTVELEARIKEEMEINPALEEGKEEQVDEQTEE
VEEASEELDIDDYLNEDDYAGYKMQGDGNGQEEEREMPISSGSSLQEQLIMQLGFEKLDE
RQTQIGIQLIGSIEADGYIRRDLEAIMNDLAFSQNVETTEEELEEILYRIQTFDPPGIAA
RNLKECLLIQLEKRDDHSEESVLAQKIVSSCFEEFTKKHYDKILKKLGVDDDQLKCAVQL
ITKLNPKPGGVTDGLVKTQYLMPDFILTNTDGKLDLTLNARNAPELRISRSYADMFQSYH
KSDKKDKKLKETVSFVKQKLDSAKWFIDAIRQRQNTLLNTMNAIIKYQYDFFLDGDESKL
RPMILKDIAEIISMDISTVSRVANSKSIQTEFGIYPLKYFFSEGIATDSGEDVSSREVKQ
KLKNHIEAEDKSKPLSDDKLEKLLKADGYNIARRTVAKYREQLNLPVARLRKEL
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaatcttagtttaatccagacattaggccagaagctgtctccacagcagattcag
tttattaagctgcttcaggtgcccacggtagagctggaagccaggatcaaggaggaaatg
gagatcaatcctgcgctggaagagggcaaggaagagcaggtcgatgaacagaccgaagag
gtagaagaagccagtgaagagctcgacatagacgattatctcaacgaagacgattatgct
gggtataaaatgcaaggcgatggcaatgggcaagaagaagaacgggagatgcctatctca
tcaggatcttctcttcaggagcaattgatcatgcaattgggatttgaaaagctagacgaa
agacaaacacagatcgggatacaactgatcggaagtatagaagcagatggttatatccgt
agagatttggaagccatcatgaatgatttggcattttctcaaaatgtagaaactacagaa
gaggagctcgaagagatcttgtatagaattcagacttttgaccctccaggcatagctgct
agaaatctaaaagaatgcttactcattcaactcgaaaaacgagacgatcattcggaagag
agtgtgttggcacaaaaaatagtgtcgagctgtttcgaagaatttactaaaaaacattac
gataagattctgaaaaaactaggagtcgatgatgaccagctcaaatgtgcggtacagctg
attaccaaactcaaccccaagccaggaggagtcaccgatggactggtgaaaacccagtac
ctgatgcctgattttattttgacgaatacagatggcaagttggacttgactctgaatgct
agaaatgcacctgagttgaggatcagtcgatcttatgcggatatgtttcagagctatcac
aaaagcgacaagaaagacaagaaattgaaggagacagtttcctttgtgaaacaaaaactg
gactcggctaagtggtttatcgatgctattcgtcagcgacagaatacactactcaatacc
atgaatgccatcatcaagtatcagtatgatttctttttggatggagatgaaagcaagctc
aggccgatgatattgaaagacattgctgaaattatcagtatggatatttccaccgtttcg
cgtgtggccaatagcaaatcgatccagacggaatttggtatatatccattgaaatatttc
ttttctgaagggattgcgacagattctggagaggatgtgagtagccgagaggtaaagcaa
aagctgaaaaatcatatcgaagcggaggacaagtccaaaccgttgtcggacgacaagcta
gagaaactattgaaggctgatggctacaacatcgcccgcagaaccgtggctaaatacaga
gagcagctcaatctgcctgtggcccgattgagaaaagagttgtag
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