Reichenbachiella carrageenanivorans: N7E81_04935
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Entry
N7E81_04935 CDS
T09654
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
rcg
Reichenbachiella carrageenanivorans
Pathway
rcg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rcg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N7E81_04935 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcg03019
]
N7E81_04935 (rnr)
03016 Transfer RNA biogenesis [BR:
rcg03016
]
N7E81_04935 (rnr)
Enzymes [BR:
rcg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
N7E81_04935 (rnr)
Messenger RNA biogenesis [BR:
rcg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
N7E81_04935 (rnr)
Transfer RNA biogenesis [BR:
rcg03016
]
Prokaryotic type
tRNA degradation factors
N7E81_04935 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
OB_HELZ2
RNase_II_C_S1
DbpA
Motif
Other DBs
NCBI-ProteinID:
UXX80444
UniProt:
A0ABY6D2Q7
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All DBs
Position
1252256..1254424
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AA seq
722 aa
AA seq
DB search
MAKKKKDNRRHINRTKKVLNIDAVRRQVADLFDESPGEAFTVKQIFSKAGLRDKQAKKEG
LNFVLDLEQEGTIEQMRNGSFRSRKTQPAEGLEGVVDHVNRRFAYVICEGQDEDIWVKSE
DLGNAIDGDRVRVRVKKGARNGSRPEGVVTKIVSRARTEFVGKIEIMPKYAFIVPDNRKI
YIDIFVYPEKIGKAKTNDKVLVKIKDWHGGKQKSPVGQVTEVLGQAGENEAEIHSIMAEF
GLPFRFPKNVEAFAEKLPVEITKDEIKKRRDLRQVTTFTIDPDDAKDFDDAISVEYLKNG
NYEIGIHIADVSYYLEEKSLLDEEAVNRATSVYLVDRTIPMLPEKLSNGVCSLRPKEEKL
TFSAMFEITPKAQIKNQWFGRTVTYSDRRFTYEEAQERIESGAGDFHEEINLLNGLAHLL
KAERFKKGAIGFETVEVKFKLDENGKPLGIFPKERKDAHKLVEEFMLLANKKVAEFIYNK
HKGKDTFVYRTHDDPDPERLVTFAKFAAKFGHRLKVGAEQVSDTLNTLMDDIHGKPEQNV
LESLAIRTMSKAIYTTEPKGHFGLAFPHYTHFTSPIRRYPDVMVHRLLQHYLDGKPSPNE
DAYKDLCRHSSEREKRAADAERASIKFKQVEFMQMAEKRPFEGIISGVTEWGIFVEMTET
KCEGMVRTSTMTDDFYEFDEKNFCMIGKRNKRMFTLGDQVTVMVVGTDIDRRTIDLEFVD
ND
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaaagaaaaaagacaataggcggcatatcaaccgtaccaagaaagtactaaat
atagatgccgtacgccggcaagttgccgacttattcgacgaaagtcctggagaggccttt
accgtcaaacaaatttttagtaaagcaggccttagagataagcaggccaaaaaagaaggg
ctcaattttgtactcgacctagagcaagagggcaccatcgagcaaatgcgcaatgggtcg
tttcgatctagaaaaacacaaccagccgaagggctagaaggtgtagtggatcatgtaaac
cgaaggtttgcttatgtgatctgtgaaggacaagacgaagatatttgggtaaaatcagaa
gatctaggcaatgccatagatggagatcgcgtccgcgtccgcgtaaaaaaaggcgctaga
aatggaagcagacccgaaggcgtagtgacaaagatcgtatccagagctcgaacagagttt
gtaggcaaaattgagattatgcccaagtatgcctttatcgtacctgacaacaggaaaata
tatattgacatcttcgtctacccagaaaagattggtaaggccaaaaccaacgacaaagtg
ttggtaaaaatcaaagactggcatggtggtaagcagaaaagcccagtaggccaagtcaca
gaagtacttgggcaggctggagaaaatgaggcagagatccattcaattatggctgagttt
ggtttgccttttaggtttcccaaaaacgtggaggcctttgccgaaaagctaccagtagaa
atcaccaaggatgaaataaagaaaagaagagacctcagacaggtgactactttcaccatt
gatcctgatgatgccaaagattttgatgatgctatatcggtagagtatttgaaaaatggc
aattatgaaataggtattcacatcgcagatgtctcttattatttggaggaaaagagccta
ttggatgaagaggcggtgaatagagcaacttcggtttatttggtggatcgtaccattccg
atgcttcccgaaaaattatctaatggagtttgctcgcttcgaccgaaggaagaaaaactg
acgttttcggctatgtttgaaattacacctaaggcgcaaattaaaaaccaatggtttggg
cgaactgtgacgtattctgacaggcgatttacttatgaagaggcacaagaacgaatcgaa
agtggcgcaggtgattttcatgaggagattaatttacttaatggcttggcacacctgctg
aaagcagaaaggttcaaaaaaggagcgattggttttgaaaccgtagaagttaagtttaag
ctcgatgaaaacggcaaaccattgggtattttcccaaaggaaagaaaagacgcacacaaa
ctggtagaagagtttatgcttttggccaataagaaagtggctgagtttatttacaacaaa
cacaagggcaaggatacgttcgtctatcgaacacacgatgacccagacccagagcgattg
gtcacttttgccaagtttgcagccaagtttggacatagacttaaggtaggtgcggagcaa
gtatccgatacgctcaatacgttgatggatgatattcatggtaagccagagcaaaacgta
ctggagtcactagcgatcagaaccatgtctaaggccatctacactacggagccgaaaggt
cactttggattggcatttccacactatactcattttacctcaccgattcgtagataccca
gatgtgatggtgcaccgtttgctccagcattatctagatggcaagccttctcccaatgag
gatgcgtataaagatttatgtcgtcattcttccgaaagggagaaaagagcggctgatgct
gaaagagcttcgatcaaattcaaacaagtcgaatttatgcaaatggccgaaaaacgacct
tttgagggtattatttcgggcgtcaccgagtggggcatctttgtagaaatgacggaaacc
aaatgtgaaggtatggtgaggacttctaccatgacggacgacttttatgagtttgatgaa
aagaatttttgcatgattggcaaacgaaacaaaaggatgtttactttgggcgatcaagtg
actgtgatggtggtaggcaccgacatcgaccgtcgaaccatagatttggaatttgtagat
aatgactaa
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