Reichenbachiella carrageenanivorans: N7E81_11110
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Entry
N7E81_11110 CDS
T09654
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rcg
Reichenbachiella carrageenanivorans
Pathway
rcg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rcg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N7E81_11110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcg03019
]
N7E81_11110
Enzymes [BR:
rcg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
N7E81_11110
Messenger RNA biogenesis [BR:
rcg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
N7E81_11110
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
ERCC3_RAD25_C
AAA_22
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
UXX77915
UniProt:
A0ABY6D241
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All DBs
Position
2808992..2810239
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AA seq
415 aa
AA seq
DB search
MKYEDYHISPELKRNLETQGFKRPTDIQFKSIPAILKGEDVLAIAQTGTGKTAAFAIPVI
DRLQRSKKHGRGDSIRCVVMVPTRELAIQITRAFEELAKNTKVRVMSIFGGVEQDPQIAK
LAKGVDVIVTTPGRMFDLVSQGFILLDQVETVVLDEADHMLNLGFIKDIQDLVKFLPKRR
QTLFFSATIDDKIKKVAYSLVHKPIRIQVSPKDPVSKNVDHAVAFIKMDDKRFFLERLIG
ENPEQKILVFVRTKVRAERVLAAMTRVKVDAQTIHGDKDQDERNRVMSAFRAGRNKILIA
TDVSARGIDIPNVDFVVNYDLPDEPENYVHRVGRTGRGKQKGQAISFCSPEEKPMLIEIE
KYTHTPVKIMDIEWNTYQDTLDLTADTNDNWKQLINEAEANPHKPKKKNKKNKKR
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgaaatacgaagattaccacatcagtccagaactaaagcgaaaccttgaaacgcaggga
ttcaagcggcctaccgacattcagttcaaatctatccctgccattctcaagggagaggat
gtattagccattgctcagacaggtacaggcaagaccgctgcttttgccattccagtgatc
gatcgattgcagcgttccaaaaaacatgggagaggtgattctattcgctgtgtagtgatg
gtgcctacacgtgagctggccatccagatcacgcgagcttttgaagaattggctaaaaac
accaaagtacgtgtaatgagtatttttgggggggtagagcaagatccacaaatcgccaaa
ttagcgaagggtgtagatgtgatcgtgacaacgccaggtagaatgttcgacttggtaagt
caggggtttatcctgctcgatcaggtggaaacggtggtgctagatgaggccgatcacatg
ctcaatcttgggtttatcaaagacattcaagatttggtgaaattcttacctaagcgccgg
cagacactttttttctccgctacgatagacgataagatcaaaaaagtagcttattcactc
gtgcataagcctatccgtattcaggtctcgcctaaagaccccgtgtctaaaaatgtagat
catgcggtagctttcatcaaaatggacgataagcgttttttcttggaaaggctcattggt
gaaaacccagagcaaaaaattcttgtttttgtaagaaccaaagttagagccgagcgagta
ttggctgctatgacgagagtcaaagtggatgctcaaaccatccatggagacaaggatcag
gatgaacgaaacagagtgatgagcgcttttagggcagggagaaataaaatattaatagcc
acagatgtgagcgccagagggatagatattcctaatgtggattttgtggtcaactatgac
ctcccagacgaacctgaaaactatgtgcatagagtaggccgtacgggacgtggcaaacaa
aaggggcaagccattagtttttgcagtccagaagaaaaaccaatgttgatcgaaattgaa
aaatatacccacacgcctgtgaaaatcatggacatcgagtggaatacctatcaggatacc
ttggatcttaccgcagatacaaacgacaattggaaacagttgatcaatgaagctgaggcc
aatccgcacaaacctaagaagaaaaataaaaagaataagaagcgctaa
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