Reichenbachiella carrageenanivorans: N7E81_12735
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Entry
N7E81_12735 CDS
T09654
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rcg
Reichenbachiella carrageenanivorans
Pathway
rcg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rcg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N7E81_12735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcg03019
]
N7E81_12735
03009 Ribosome biogenesis [BR:
rcg03009
]
N7E81_12735
Enzymes [BR:
rcg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
N7E81_12735
Messenger RNA biogenesis [BR:
rcg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
N7E81_12735
Ribosome biogenesis [BR:
rcg03009
]
Prokaryotic type
rRNA helicases
N7E81_12735
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
Helicase_RecD
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UXX78223
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All DBs
Position
3178621..3180378
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AA seq
585 aa
AA seq
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MNTFSELGLEPRLVDALNDLGIVKPTQIQQEAIPILLDSMQDFIGLAQTGTGKTAAFGLP
LLQVVNEDSNTCQAIVLAPTRELAQQIAEGLNSFAKNIRKLKIEVVFGGAAITNQIKALK
AKPQIVVATPGRLVDLINRKVISMSSLSYVVLDEADEMLNMGFKEELNKILADTPAEKTT
WLFSATMPSAITNIVSTYMNNPKEVSVKSGVEVNKNISHQYLVVKMSDKLEAIKRVLDVN
PNFYGVMFCRTKIDTQNLADDISRAGYRAEALHGDLTQKQRDAVMRKFKDRSLSMLVATD
VAARGIDVNDVTHVIHHRLPDELEFYTHRSGRTARAGKKGISIALVSKGEVRRIGDIERR
LKIKFEKELIPTADEVMSSRMDNSLKLIADYEIKGELPADLRKQAQEMFTALSKEELVDK
LLAQELSKVNISNSGDLNQTENSRSKEGGRERSSGTHARLFINLGKIDDISNAELLHMIC
DISGADKSKIGKIELQQKRAYFEVEKSIANDVMGKFKGYEFEGREIRVNEEEQSSRSGHA
QQRGYQDRKRRGSGGGGSGRSGRSGGSGRSNSGGGRSGRSGGRRR
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
ttgaatactttctcagaactcgggcttgaaccaaggttggtcgatgctcttaacgattta
ggcattgttaaacccacccagattcagcaggaggccattccgatacttctcgattctatg
caagactttattggtctggcacaaacgggtaccggaaaaaccgcggcctttggattgcct
ttgcttcaggtagtcaacgaagactccaatacctgtcaggcaattgtacttgcacctact
agagaactcgcacagcagattgcagaaggcttgaatagcttcgctaaaaacatacgtaaa
ttgaagatcgaagtggtatttggaggagctgccattaccaaccaaatcaaagcactcaaa
gccaagcctcagattgtagtagctacaccaggtcgattggtagatttgatcaatcgcaaa
gtgatcagcatgagttcgttgagctatgtggtgctagacgaagctgacgaaatgcttaac
atgggcttcaaagaagagcttaacaagatattggcagatacacctgctgagaaaacaact
tggttgttttctgccaccatgccttcggccatcaccaacattgtaagtacttacatgaac
aatccgaaagaggtttcggtaaaaagtggcgtagaagtaaacaaaaatatatctcatcaa
tacttggtagtaaagatgagtgacaaactagaggctatcaaaagagtattggatgtcaat
cctaatttttatggagttatgttttgccgaactaaaattgatacgcaaaacctagctgat
gacattagtcgtgcgggttatagagcagaggccttgcatggagatcttacccagaagcag
cgagacgctgtgatgcgcaaattcaaggacaggtcattgtctatgctcgtagctaccgat
gtggctgctcgtggtatagatgtaaatgacgtgacacacgtgattcaccacagattgcca
gacgaattggagttttatacccatagaagtggtagaacagcccgagcaggtaaaaaagga
atctctatagccttggtaagcaaaggtgaggtaaggcgaattggagatatagaacgaaga
ttgaaaatcaaattcgaaaaagagttgatacctacggctgacgaggtgatgtcttctcgt
atggacaattctttgaagttgatcgctgattatgaaatcaaaggtgagttgcctgcagac
ttgagaaagcaagctcaggaaatgtttaccgctctatctaaagaagaattggtagataag
cttttggctcaagagttatcaaaagttaatatctctaacagtggagaccttaatcaaaca
gaaaatagtagatctaaagaagggggtagagagcgatctagtggcacacacgccagattg
tttatcaacctagggaaaattgatgatatatctaatgccgaattgctccatatgatttgt
gacatctctggtgcagacaaatctaagattggtaaaatagaactgcagcaaaaaagagcc
tatttcgaggtggagaaaagtattgccaatgatgttatgggcaaattcaaaggctacgag
tttgaaggtagagaaatcagagttaatgaagaggagcagtcttctaggtctggtcatgct
cagcaacgaggctatcaggatagaaaacgacgtggttctggaggcggcggctcaggaagg
tctggtagatcaggtggttccggacgctctaatagtggcggaggccgttcgggcagatct
ggtggacgtagacgctga
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