Reichenbachiella carrageenanivorans: N7E81_15740
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Entry
N7E81_15740 CDS
T09654
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
rcg
Reichenbachiella carrageenanivorans
Brite
KEGG Orthology (KO) [BR:
rcg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rcg03009
]
N7E81_15740 (rlmD)
Enzymes [BR:
rcg01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
N7E81_15740 (rlmD)
Ribosome biogenesis [BR:
rcg03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
N7E81_15740 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
Methyltransf_15
MTS
N6_N4_Mtase
RrnaAD
PrmA
DUF5886
FtsJ
Methyltransf_11
UPF0020
Methyltransf_2
Methyltransf_23
PCMT
Motif
Other DBs
NCBI-ProteinID:
UXX78811
LinkDB
All DBs
Position
complement(3876828..3878231)
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AA seq
467 aa
AA seq
DB search
MARKNKNIVIEHLIVEAVAAEGKSLARQDGQVIFIERTVPGDVVDVQVRKKRKAYSEGYP
LKFHKYSELRIEPICQHFGACGGCKWQNLAYDSQLEFKQQQVEDHLTRIGKVELPEIAPI
LGSAKTDRYRNKLEFTFSNKKWLTKDQIDSEEVIERNALGFHVPRLFDKIVDIDTCHLMA
DPANAIKNEIRSFAIANDYSFFDIREQVGLLRILMIRYTDAGELMVLIQFFEPDQEKIDM
LMNHLKDKFPEITSLLYVINQKKNDTIYDQEIITFAGKDHIIEKMGDLEFKIGAKSFYQT
NSAQAKVLYDKTLEFADLKGDELVYDLYTGTGTIANYCAKQAKKVVGIEYVEAAIQDAFV
NAEVNGITNTDFFAGDMKDLLNDEFIAEHGHPDVIITDPPRAGMHENVVNMILKVAPEKV
VYVSCNPATQARDIALMDADYKVTKVQPVDMFPHTHHVENIVLLERK
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atggcaagaaagaataaaaacatagtaatagagcatctaattgtagaagcagtagcggcc
gaaggcaaaagtttagcgagacaggatggtcaggtgatctttatagaaagaacagtacct
ggtgatgtggttgatgttcaggtacgcaaaaaaagaaaggcttactcggaagggtatcca
ttaaaatttcataaatactctgagctcagaatagaaccgatttgtcaacactttggtgcc
tgtgggggatgcaagtggcaaaacttggcctatgattctcaactcgaatttaaacagcag
caggtagaggatcatctgaccagaattggcaaagtagagttgcctgagatagccccgata
ttaggttctgccaaaaccgaccggtatagaaataaacttgaatttactttttcgaataaa
aaatggctgaccaaggatcaaattgattctgaggaagtgattgaaaggaatgcgctaggt
tttcatgtacctcgtttgtttgataagattgtcgatattgatacttgccatttgatggcc
gatccagcgaatgccatcaaaaatgaaattcgctcttttgccattgcgaatgattattca
ttctttgatatccgtgagcaagtaggactgcttcgcattttgatgatccgctataccgat
gcaggagaactgatggttttgattcagtttttcgagccagaccaggagaagattgatatg
ctgatgaaccatctcaaggataaatttcctgagattacctctttgctctatgtgatcaat
cagaagaaaaatgatacgatatatgatcaagaaattatcactttcgcaggcaaggatcat
atcatcgaaaagatgggagacttggagttcaaaataggagcaaagtcattctatcaaacc
aattctgcgcaagcgaaagtgctctatgataagacattagaatttgccgatctcaaaggg
gatgaattagtttatgatctatatacgggcacgggtaccatcgctaattattgtgcgaag
caagccaaaaaggtagtgggaatcgaatatgtggaggcggccattcaagatgcttttgtg
aatgcagaagtaaacggcatcaccaatacagacttctttgctggggacatgaaggatttg
ctcaacgacgaatttatcgccgagcatgggcatccagatgtgatcattaccgatccgcca
agagcgggtatgcatgaaaatgtggtaaatatgatcctgaaagtagcccctgaaaaagtg
gtctacgtgagctgtaatccagccacccaggccagggacattgccctaatggatgcggac
tataaagtgaccaaggtacagccagtagatatgtttcctcatacgcatcatgtggagaat
attgtgttgttggaacggaaatga
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