Reichenbachiella carrageenanivorans: N7E81_16940
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Entry
N7E81_16940 CDS
T09654
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rcg
Reichenbachiella carrageenanivorans
Pathway
rcg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rcg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N7E81_16940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcg03019
]
N7E81_16940
Enzymes [BR:
rcg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
N7E81_16940
Messenger RNA biogenesis [BR:
rcg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
N7E81_16940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
CMS1
Utp25_C
Phage_integrase
ERCC3_RAD25_C
P-loop_SecA
SUa-2TM
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UXX79043
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All DBs
Position
4182206..4183450
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AA seq
414 aa
AA seq
DB search
MKFNELPLIAPILKALQDKNYSEPTAIQEKAIPLVLQQNDVMGCAQTGTGKTAAFAIPII
QRIHELEEGKSGKPQLLSLIVTPTRELAIQIDDNIRLYSKYTNLKHAVIFGGVKQGQQVE
KMKRGVHVLVATPGRLLDLITQGHISLSQVKIFVLDEADRMLDMGFVNDVKKLLKLLPTK
RQSLFFSATMPKSILNLANEILTNPKKIEVSPVSSTAETIQQYLYYTNRSDKKKLLMHIL
KDEKMDQVLIFGRTKHGADRIVRDLQKHKIKSAAIHGDKAQNQRQKALTDFKSGKLRVLV
ATDIAARGIDIDKLKYVINFDVPEAAETYVHRIGRSGRAGESGIAITMSEPEENTLVKDI
EKLTKQSIPVIKDQPFPQTEKPMTDAEKKEWNKEKQRRKQEFFANRNKNKSGRR
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcaacgaattgccactcattgcgcctatattgaaggcgctccaagataaaaac
tactccgaacctacagccatacaagaaaaagccataccgctggtattgcaacaaaatgac
gtgatgggctgtgcccaaacaggcactggtaaaacagctgcttttgctatacctatcatc
cagcgtatccacgaattggaagaaggaaaaagcggaaagcctcaactcctgtccctaatc
gtgacacctacacgtgagctagccatacagatcgacgacaacatccgcctgtacagcaaa
tacacgaacctgaaacacgccgtgatattcggtggcgtaaagcaaggacagcaagtagaa
aaaatgaaacgtggtgtgcatgtattagtcgccacaccaggccgattactcgacttgatc
acacaaggtcatatttcactaagtcaggtcaaaattttcgtactcgacgaagctgaccgt
atgctcgacatgggttttgtaaacgacgtaaagaaactactgaagctcttgccaaccaag
cgacagtcgctcttcttctccgccaccatgcccaaaagcatcctcaatctggccaacgaa
atactgaccaaccctaagaaaatagaagtaagtccagtctcatctactgctgagactatc
caacaatacttgtattataccaacagatccgacaagaaaaaactgctgatgcacatcctc
aaggatgaaaaaatggatcaggtattaatttttggaagaaccaagcacggcgccgatcgt
atcgttcgggatttgcaaaagcacaaaatcaagtcggcggctattcatggcgacaaagct
caaaaccaacgccaaaaagcactgaccgatttcaaatcgggcaagctcagggtattggta
gctacagatatcgctgcacgtggcatcgacatcgacaagctcaagtatgtaatcaatttc
gacgtgcccgaggctgctgagacttatgtacaccgcataggtagatctggtcgtgcaggg
gagtctggtatcgccatcactatgtctgagcctgaagaaaacacactggtgaaggacata
gagaagctgaccaaacaaagcatccctgtgatcaaagatcagccgtttccccaaacggaa
aagccgatgacagacgcagagaaaaaagaatggaacaaagaaaaacaacgccgcaagcag
gaatttttcgccaatagaaataaaaacaaatctggtagacgttag
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