Ruminococcus champanellensis: RUM_00270
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Entry
RUM_00270 CDS
T02600
Name
(GenBank) Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
rch
Ruminococcus champanellensis
Brite
KEGG Orthology (KO) [BR:
rch00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rch03032
]
RUM_00270
03400 DNA repair and recombination proteins [BR:
rch03400
]
RUM_00270
Enzymes [BR:
rch01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
RUM_00270
DNA replication proteins [BR:
rch03032
]
Prokaryotic type
DNA Topoisomerases
RUM_00270
DNA repair and recombination proteins [BR:
rch03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
RUM_00270
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
CBL16305
UniProt:
D4L9L0
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Position
complement(23872..25854)
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AA seq
660 aa
AA seq
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MAKKQADYGNESITMLKGADKVRKRPGVIFGSDGLDGCEHSVFEVISNSIDEARAGFGDH
IIVTRYQDQTIEVQDFGRGCPVDYNNTEKRYNWELVYCELYAGGKYDAEGDTYAYSLGLN
GLGLCATQFASEFMDVEIFRDGFRYNLHFEHGNNVGGLKKEPTTQKKTGTRTRWKPDLDV
FTDIQIPDEFFHDILRRQAIVNPNLLFTYRSQSEDGSFSVREFRYENGITDYVQEIVGDK
AMTSIQHWQCEKKGRDRADKPEYKVRINVALTFSNQIKLTEFYHNSSFLEHGGSPERAVR
QAFVSQIDSYLKQNSKYLKNESKITYPDIEDCLVLVSSGFSTQTSYENQTKKAITNKFIY
EAMTEFLKHQIEVYFIENPDEATRICEQILVNKRSRENAERTRLNLKKKLAGTIDLSNMV
QKFVDCRTKDTARRELYIVEGDSALGSVKLAREAEFQAVIPVRGKILNCLKADYAKIFKN
EIITDIIKVLGCGVEVRTKANKDLSSFSLENLRWHKIVICTDADVDGFQIRTLILTMLYR
LTPTLIDEGYVYIAESPLYEINSKDKTYFAYTEKEKTKILSHLEGKKFTIQRSKGLGENE
PEMMSLTTMNPATRRLIQVTSDEAEKTFAAFDMLLGDNLQARKDFISEYGGDYLELADIS
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaaagcaggcggattacggcaacgaaagcatcaccatgctcaagggcgcagac
aaggtacgcaagcgacccggggttattttcggttcggatggactggacggctgcgagcat
tccgtttttgaggtcatctccaactccattgacgaagcacgggccggcttcggggatcac
atcatcgtcacccggtaccaggatcagacgatcgaggtgcaggacttcggcagaggctgc
ccggtggattacaacaatacggagaaacgctacaactgggagctggtttactgtgagctg
tacgccgggggaaagtatgacgcagagggggatacctacgcctattccctggggctgaac
ggtctggggctttgtgccacccagtttgcctcggaatttatggatgtggagatcttccgg
gatggtttccggtacaacctgcattttgagcacggcaataatgtgggcggactgaagaaa
gaacccaccacccagaaaaaaaccggtacccggacccggtggaagccggatctggatgta
ttcacggatatccagatcccggacgagtttttccacgatattctccggcggcaggcaatc
gtcaatccgaacctgctgtttacctaccggagccagagtgaggacggcagcttttctgtc
cgggaattccggtacgaaaacggcattaccgactatgtgcaggagatcgtgggagacaag
gctatgacctccatccagcactggcagtgcgagaaaaaggggcgtgaccgggcggacaag
ccggagtataaggtgcgcatcaatgtggcactgactttttccaaccagatcaagctgacg
gagttttaccacaactccagctttctggagcatggcggctctccggaacgggcagtgcgg
caggcattcgtgtcccagatcgacagctatctcaagcagaacagcaagtatctgaaaaac
gaaagcaagatcacctatccggacattgaggactgcctggtgctggtatcctccggcttc
tccacccagacctcctacgaaaaccagaccaagaaggccatcaccaataagtttatctat
gaggccatgacggaattcctcaagcatcagattgaggtgtacttcatcgaaaacccggac
gaagccacccggatctgtgaacagattctggtcaacaagcggagccgggagaatgcggaa
cgcaccaggctgaatctgaaaaagaagctggcaggcaccattgacctgtccaacatggta
cagaaattcgtggactgccgcacaaaggatacagcccggcgggagctgtacatcgtggag
ggcgactccgcattgggctctgtcaagctcgcccgggaagcggagttccaggcggtgatc
ccggtgcggggcaagatcctcaactgtctgaaggcggactacgccaaaatcttcaaaaac
gagatcattacggatattatcaaggtactgggctgcggcgtggaggtccggacaaaggca
aataaggatttgtcctccttctctctggaaaatctgcgctggcacaagatcgtcatctgt
acggatgcggacgtggacggattccagatccgtaccctgattctcaccatgctgtaccgg
ctgacacccaccctcattgacgagggatatgtatacattgcggaatctcccctgtatgag
atcaacagcaaggacaaaacctactttgcatatacagaaaaggaaaagaccaagatcctg
tcccatctggaagggaagaaattcaccatccagcgttccaagggacttggcgaaaacgaa
ccggaaatgatgtccctgaccaccatgaaccctgccacacgccggctgatccaggtcacc
tccgacgaggcggaaaagacctttgccgcctttgatatgctgctgggggacaatttgcag
gcgagaaaggatttcatttctgaatacggcggcgattatctggagcttgccgatatttca
taa
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