Ruminococcus champanellensis: RUM_04400
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Entry
RUM_04400 CDS
T02600
Name
(GenBank) tRNA pseudouridine 55 synthase
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
rch
Ruminococcus champanellensis
Brite
KEGG Orthology (KO) [BR:
rch00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rch03016
]
RUM_04400
Enzymes [BR:
rch01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
RUM_04400
Transfer RNA biogenesis [BR:
rch03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
RUM_04400
Prokaryotic type
RUM_04400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
Motif
Other DBs
NCBI-ProteinID:
CBL16672
UniProt:
D4LAM7
LinkDB
All DBs
Position
485194..486096
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AA seq
300 aa
AA seq
DB search
MNGILCMYKPEGFTSFDVIAKLRGILQMRRLGHAGTLDPMATGVLPVFVGGATRACDILP
NQEKSYLARFALGYETDTQDSTGTVTNRYDRQVTRQQLLELLPRFTGRISQIPPMYSAVS
VDGRRLYELARQGVEVERKPRTVTMDRLELRQFDEASQTGTLFLACSKGTYVRTILHDLG
RALGCGGVMTGLERQSSCGLTLEDCVTFAQVEAARDAGTLSELLLPVDRMFAAYPALHLN
PAQSRMYRNGVKLSLDRLTLPEQSEKYRIYGDTGCFFGIGRTEEGLLRVDKNLTAGEDAS
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
atgaacgggatattatgcatgtacaagccggaggggttcacctccttcgacgtgatcgcc
aagctgcggggcattctgcagatgcggcggctggggcatgcgggcaccctggatcctatg
gcaaccggggtgctgccggtgtttgtgggcggagcgacccgtgcctgtgacatcctcccc
aaccaggagaaaagctatcttgcccggtttgccctgggctatgaaaccgatacccaggac
agcaccggcaccgtcaccaaccgatatgaccggcaggtgacaaggcagcagttgctggag
ctcctgccccggtttacgggtcgaatcagtcagatccctcccatgtactccgccgtatcc
gtggacgggcggcggctgtatgagcttgctcggcagggggtggaggtggagcggaagccc
cgcaccgttaccatggatcggctggagctgcggcagtttgacgaagcatcccagaccgga
accctgtttcttgcatgctccaagggcacctatgtacgcaccattcttcacgatctgggc
agggcgctgggctgcggtggcgttatgaccggactggagcgtcagtcctcctgcggtctg
accctggaggattgcgtgacctttgcccaggtggaggctgcccgggacgcaggaacgctt
tcagagctgctgctgcccgttgaccggatgtttgcggcataccctgccctgcatctgaat
cctgcccagagccgcatgtaccggaacggggtcaagctgtccctggatcggctcaccctg
ccggagcagtcggagaaataccggatctacggggatacgggctgctttttcggcatcggc
agaacggaggagggcttgctccgggtggacaagaatctgaccgcaggagaggatgcatcg
tga
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