Ruminococcus champanellensis: RUM_04940
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Entry
RUM_04940 CDS
T02600
Name
(GenBank) chaperonin GroL
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
rch
Ruminococcus champanellensis
Pathway
rch03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rch00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RUM_04940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rch03019
]
RUM_04940
03110 Chaperones and folding catalysts [BR:
rch03110
]
RUM_04940
03029 Mitochondrial biogenesis [BR:
rch03029
]
RUM_04940
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rch04147
]
RUM_04940
Enzymes [BR:
rch01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
RUM_04940
Messenger RNA biogenesis [BR:
rch03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
RUM_04940
Chaperones and folding catalysts [BR:
rch03110
]
Heat shock proteins
HSP60 / Chaperonin
RUM_04940
Mitochondrial biogenesis [BR:
rch03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
RUM_04940
Exosome [BR:
rch04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
RUM_04940
Exosomal proteins of other body fluids (saliva and urine)
RUM_04940
Exosomal proteins of breast cancer cells
RUM_04940
Exosomal proteins of colorectal cancer cells
RUM_04940
Exosomal proteins of bladder cancer cells
RUM_04940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
CC_CEP250
Motif
Other DBs
NCBI-ProteinID:
CBL16722
UniProt:
D4LAS7
LinkDB
All DBs
Position
complement(538654..540282)
Genome browser
AA seq
542 aa
AA seq
DB search
MAKQIKYGEEARKALQAGIDSLADTVKITLGPKGRNVVLDKKFGAPLITNDGVTIAKEVE
LEDPFENMGAQLVKEVATKTNDAAGDGTTTATLLAQAMVREGMKNIAAGANPMIVKKGIQ
KAVDAAVNAIKANSKPVEGSADIARVGTVSSADENVGKLIAEAMEKVSTDGVITLEESKT
AETYSEVVEGMQFDRGYISPYMVTDADKMEAVYDDAYILITDKKISSIQEILPLLEQVVQ
AGKKLVIIAEDMEGEALTTIILNNLRGTFKCAAVKAPGFGDRRKEMLKDIAILTGGEVIT
SELGLELKDTTIAQLGRAKQVVIQKENTIIVDGAGASEEIKARISQIRSQIETTTSDFDK
EKLQERLAKLSGGVAVIKVGAATEIEMKEKKLRIEDALAATKAAVEEGIVAGGGTALINA
IPAVEKLLPSLDGDEKTGAKIILKALEEPVRQIARNAGLEGSVIIDKIRRSRKVGYGFDA
YNETYVDMIPAGIVDPTKVTRSALQNAASVAAMVLTTESLVADIKEENAAAAPAMPAGGM
GF
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atggctaagcagatcaagtacggcgaagaagcaagaaaggcactccaggcaggcatcgac
agcctggcggatacggtcaagatcacactgggccccaagggcagaaacgtggttctggac
aagaagttcggcgctccgctgatcaccaatgacggcgtgaccattgcaaaggaggtcgag
ctggaggatccctttgagaacatgggcgcacaactggtcaaggaggttgcaaccaagacc
aatgacgctgccggcgacggcactaccactgccaccctgctggcacaggcaatggttcgg
gaaggcatgaagaacattgcagcaggcgcaaatcctatgatcgtcaagaagggcatccag
aaggctgttgacgcagcagtcaacgccatcaaggcaaactccaagccggtagagggcagc
gcagacatcgcaagagtcggcaccgtatcctccgcagacgagaacgtgggcaagctgatt
gccgaggcaatggagaaggtttccaccgatggcgtcatcaccctggaggaaagcaagacc
gcagaaacctacagcgaggtcgttgagggcatgcagtttgaccggggctacatctccccc
tatatggtcactgacgctgacaagatggaagcagtttacgacgacgcttacattctgatt
accgataagaagatttcctccatccaggagatcctgcctctgctggagcaggtcgtacag
gctggcaagaagctggtcatcattgcggaggatatggagggcgaagcgctcaccaccatc
atcctcaacaacctgagaggcaccttcaagtgtgctgctgtcaaggcaccgggctttggc
gacagaagaaaggaaatgctgaaggatatcgccatcctcaccggcggcgaggtcatcacc
tccgagctgggtctggagctgaaggataccaccattgcacagcttggccgtgcaaagcag
gtagtcatccagaaggagaacaccatcatcgtggacggcgcaggggcatccgaggagatc
aaggcgcgcatcagccagatccgcagccagatcgagactacaacctccgactttgacaag
gaaaagctccaggagcgtctggcaaagctgtccggcggcgtagctgtcatcaaggtgggc
gctgcaaccgagatcgagatgaaggaaaagaagctgagaatcgaagacgctctggctgct
accaaggctgctgttgaggaaggcatcgttgccggcggcggcacagccctcatcaatgcg
attccggcagtggaaaagctgctgcccagcctggacggggacgaaaagaccggtgcaaag
atcatcctcaaggcactggaggaaccggttcgccagatcgcacggaatgccggtctggaa
ggcagcgtcatcatcgacaagatccgccgctccagaaaggttggctacggctttgacgca
tacaacgaaacctatgtagatatgatccctgccggcatcgtagatcccacaaaggtgacc
cgttccgcattgcagaatgcagcatccgttgcagcaatggttctgaccaccgagagtctg
gttgcagacatcaaggaggagaatgcagcagctgctcccgcaatgcccgcaggcggcatg
ggcttctaa
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