Ruminococcus champanellensis: RUM_08080
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Entry
RUM_08080 CDS
T02600
Name
(GenBank) Superfamily I DNA and RNA helicases
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rch
Ruminococcus champanellensis
Pathway
rch03420
Nucleotide excision repair
rch03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rch00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RUM_08080
03430 Mismatch repair
RUM_08080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rch03400
]
RUM_08080
Enzymes [BR:
rch01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RUM_08080
DNA repair and recombination proteins [BR:
rch03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RUM_08080
MMR (mismatch excision repair)
Other MMR factors
RUM_08080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
Viral_helicase1
AAA_19
AAA_30
Motif
Other DBs
NCBI-ProteinID:
CBL16994
UniProt:
D4LBJ9
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All DBs
Position
complement(881800..882936)
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AA seq
378 aa
AA seq
DB search
MPSMNLIKIECAGSGKTWSICQTALSIVSSDIKKRVAVISYTNQGVQAVQTEIKKQNNGI
MHSRITVESLYSFLLRELIKPYQTYIFGINEVKSLDFSRMYGFINKHRIGQKARYMTVGH
NITANEAAELVVQLNNRSNGQVIKRIERIYDTIFFDEVQDLSGYDLEIIRRIAASSINLV
CVGDPKQATFKTNSGQKNKNISGAKMELFFKNLEKSHSAQLTYNNISRRFNVDICRFAND
VYPSSNEMSTFMTSITPHDGVFLILKSDIPDYYDQYSPQVLRYDKKTDTLGLSSMNFGEC
KGLTFDRILIFPNKPFLEYIQKGKALGSPEKYYIAATRSRYSIAIVVDKFPSKSKFQLED
TIIPVGTGNIIGKKILFS
NT seq
1137 nt
NT seq
+upstream
nt +downstream
nt
atgccatcaatgaacttgattaaaatagaatgtgccggctcaggcaaaacgtggagtatt
tgtcaaacagccttgtcaatcgtatcatcagatatcaaaaaacgagtagcggttatttcc
tataccaatcaaggtgttcaggcagtacagactgaaattaagaaacagaataatggcata
atgcatagtcgtataaccgtagaatcattatactcctttttgcttagagaactgataaaa
ccatatcaaacatatatctttggaattaacgaagttaagagccttgatttttcacgaatg
tatggatttatcaataaacatcgtattgggcaaaaagcaagatatatgacagtgggacat
aacattacagcgaatgaagctgcggaattggttgttcagcttaataaccgaagtaatggt
caagtaataaaaagaattgagagaatctatgataccattttctttgatgaagttcaggat
ttatctggatacgatcttgaaatcataaggcgtattgctgcctcatcaattaacttggta
tgtgtaggagaccctaagcaggctacgttcaaaacaaacagtggtcagaaaaataaaaac
atttccggagcgaagatggaattgtttttcaaaaatcttgaaaaaagccactcggcgcag
ttaacttataataatataagcagacgttttaacgtggatatttgtagatttgctaatgat
gtttatccgagcagtaatgaaatgtcaacatttatgacctcaattacaccgcatgatggc
gtatttcttattcttaaatctgatattcctgattattacgatcaatattctccgcaagtt
cttaggtacgataaaaaaacagatactttgggattatcctctatgaattttggagagtgc
aaaggcttgacttttgataggattttaatattcccgaataaaccattcttggagtatatt
caaaaaggtaaggctttggggagtcctgaaaaatattatattgctgctacacgttcacgt
tacagcatagcgatcgtagttgataaattcccttcaaaatcaaaattccaattagaagat
actatcatacctgttggaacgggtaatattatcggtaagaaaatactgtttagttga
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