Ruminococcus champanellensis: RUM_13300
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Entry
RUM_13300 CDS
T02600
Name
(GenBank) Holliday junction DNA helicase, RuvB subunit
KO
K03551
holliday junction DNA helicase RuvB [EC:
5.6.2.4
]
Organism
rch
Ruminococcus champanellensis
Pathway
rch03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rch00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
RUM_13300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rch03400
]
RUM_13300
Enzymes [BR:
rch01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RUM_13300
DNA repair and recombination proteins [BR:
rch03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
RUM_13300
RecFOR pathway proteins
RUM_13300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RuvB_N
AAA_lid_4
RuvB_C
AAA
AAA_5
AAA_16
Mg_chelatase
TIP49
AAA_14
Sigma54_activ_2
DUF815
Sigma54_activat
AAA_3
AAA_18
IstB_IS21
nSTAND3
TsaE
RNA_helicase
MCM
NTPase_1
AAA_24
AAA_2
AAA_17
AAA_28
NACHT
NB-ARC
Parvo_NS1
AAA_25
Rad17
Resolvase
ABC_tran
NPHP3_N
AAA_11
AAA_PrkA
Motif
Other DBs
NCBI-ProteinID:
CBL17454
UniProt:
D4LCV9
LinkDB
All DBs
Position
1461458..1462468
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AA seq
336 aa
AA seq
DB search
MTAPEFTPPDVELEFSLRPKTLNEYIGQDKVKENLAVYIEAARRRGEPLDHVLLYGPPGL
GKTTLAGIIAQEMGVNLRITSGPAIEKAGDLAALLTNLSENDVLFIDEIHRLSRAVEEVL
YPAMEDNALDIVIGKGPSANSIRVDLPKFTLVGATTRAGQLTSPLRDRFGIIQRLELYPP
EQLCDIIRRSSMLLGIPCEYDGAMELARRARGTPRIANRLLKRVRDFADVMGDGRISRQI
ACTALDKLEIDELGLDSLDKRMLQMIIKGYNGGPVGLETLASAIGEEAVTLEDVCEPYLM
QLGFLSRTPRGRCATQLAYQHLGIPQEGSQDGQLTL
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atgaccgctccggagtttactcctccggatgtggaactggagttctccctccgtccgaaa
acactcaatgaatatatcggtcaggataaggtcaaggaaaacctggcggtttatattgaa
gcagcacgccgcagaggggagcctctggatcatgtgctgctgtatggtccccccggtctg
ggcaagaccacccttgcaggcatcattgcccaggagatgggtgtcaacctgcggatcacc
tccggccctgccattgaaaaggcaggggatctggcggcactgctgacgaatctgtcggaa
aatgacgtgctgttcattgacgagatccatcggctttcccgggcggtggaggaggtgctg
tatccggccatggaggacaatgccctggatattgtgatcggcaaggggccctccgccaat
tccatccgggtggatctgccgaaattcactctggtgggggctaccacccgtgcgggacag
ttgacctcccccctgcgggatcggttcggcatcatccagcggctggagctgtacccgccg
gagcaattgtgcgacatcatccgccgcagcagcatgctgctggggattccctgtgaatac
gacggcgctatggagcttgcccggcgtgcccggggcacaccccgtattgccaaccggctg
ctgaagcgggtacgggattttgcagatgttatgggggacggaagaatctcccgccagatt
gcctgtaccgctctcgacaagctggagatcgatgagctggggctggacagtctggacaaa
cggatgctgcaaatgatcatcaagggctacaacgggggaccggtcggcctggaaaccctg
gcttccgccatcggggaggaggctgtgaccctggaggatgtgtgcgagccgtatctgatg
cagctgggctttttgtcccggacgccccggggcagatgcgcaacccagcttgcctatcag
catctgggcattccacaggagggaagccaggacggtcagctgaccttgtga
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