Ruminococcus champanellensis: RUM_13580
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Entry
RUM_13580 CDS
T02600
Name
(GenBank) D-alanyl-D-alanine carboxypeptidase
KO
K07258
serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:
3.4.16.4
]
Organism
rch
Ruminococcus champanellensis
Pathway
rch00550
Peptidoglycan biosynthesis
rch01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rch00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
RUM_13580
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
rch01002
]
RUM_13580
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
rch01011
]
RUM_13580
Enzymes [BR:
rch01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
RUM_13580
Peptidases and inhibitors [BR:
rch01002
]
Serine peptidases
Family S11: D-Ala-D-Ala carboxypeptidase A family
RUM_13580
Peptidoglycan biosynthesis and degradation proteins [BR:
rch01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
RUM_13580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_S11
PBP5_C
Beta-lactamase2
Peptidase_S13
Transpeptidase
Motif
Other DBs
NCBI-ProteinID:
CBL17480
UniProt:
D4LCY5
LinkDB
All DBs
Position
complement(1492289..1493425)
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AA seq
378 aa
AA seq
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MKKWLSLMLAVLCCLHLCCPAVHAADPLGISAQAYVLMEADTGKVLLSKNGDEKRPIAST
TKIMTTLLCLESGGLDDWFVVDPEAIRVEGSSMGLQEGDVVTKRMLCYGMLLPSGNDAAN
ATAVRLAGSIPEFAKLMNARAARIGMTHTCFVTPSGLDAEGHGASVRDMGLLARTAMQNP
DFRAICSQSRAEVCFGNPPYNRWLKNTNKLLTMYEGVVGVKTGFTDAAGRCLVSFCERDG
VSLLCVTLHAKDDWNDHMKLYDYGFAHVVSQPVEPPDALSVSVVGGTADTVALRTRDPLS
VGTDNGDLRQLMVQVQVEPFLYAPVPENARVGNLAYYYEGRHVADVPLYTVDAVAAQEQE
PETPGFWQALLARIRSWF
NT seq
1137 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaatggctgagtctgatgctggcggtactgtgctgcctgcatctttgctgtccg
gcggtgcatgctgccgaccctctgggcatttccgcccaggcttatgtgctgatggaggcg
gacaccggcaaggtgctgttgtccaaaaacggggacgaaaagcgtcccatcgccagcacc
accaagatcatgaccaccctgctgtgcctggaaagcggcggactggatgactggttcgtg
gtggatccggaagccatccgggtggagggctcctccatgggactccaggagggggacgtg
gtcaccaaacgcatgctctgctatggcatgctgctgccctccggcaacgatgcagccaat
gccacagccgtccggctggctggctccatcccggaatttgcaaagctgatgaatgcacgg
gctgcccggatcggcatgacccacacctgctttgtgaccccctccggtctggatgcggag
ggacacggggcatccgtccgggatatgggactgctggcacggacagccatgcagaacccg
gactttcgtgccatttgcagccagtcccgggcagaggtgtgcttcggcaatccgccctac
aaccggtggctgaaaaacaccaacaagctgctgaccatgtatgagggcgtggtgggcgtc
aaaaccggctttacggatgcagcaggcagatgcctggtgtccttctgtgaacgggacggg
gtatccctgctctgtgtgacgctgcatgccaaggacgactggaatgaccacatgaagctg
tacgactacggctttgcccatgtggtatcccagcctgtggagccgccggatgccctgtcc
gtcagcgtggtgggcggcacggcggataccgttgccctgcgcacccgggatcccctgtcc
gttggcacggataacggagatctgcggcagttgatggtgcaggtacaggtggaacccttt
ttgtatgcccctgtaccggagaatgcccgggtgggcaatctggcttattattatgaagga
cggcacgtcgccgatgtgcccctgtatacggtagatgcggttgctgcccaggagcaggaa
ccggaaacccccggcttctggcaggcgttgcttgcccgcatccgaagctggttctga
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