Ruminococcus champanellensis: RUM_18220
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Entry
RUM_18220 CDS
T02600
Name
(GenBank) Superfamily II DNA and RNA helicases
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rch
Ruminococcus champanellensis
Pathway
rch03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rch00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RUM_18220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rch03019
]
RUM_18220
03009 Ribosome biogenesis [BR:
rch03009
]
RUM_18220
Enzymes [BR:
rch01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RUM_18220
Messenger RNA biogenesis [BR:
rch03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RUM_18220
Ribosome biogenesis [BR:
rch03009
]
Prokaryotic type
rRNA helicases
RUM_18220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
baeRF_family3
DUF6921
Rep_fac_C
Motif
Other DBs
NCBI-ProteinID:
CBL17876
UniProt:
D4LE31
LinkDB
All DBs
Position
complement(1931337..1933004)
Genome browser
AA seq
555 aa
AA seq
DB search
MGFTEMTEIQEKSIPLMMQGIDLIGRSNTGTGKTAAFGIPAVESISQEDPRSVQVLILCP
TRELAMQACEELKKLSRFMPWVRPCAVYGGASMDRQIGDLKRGANIVVGTPGRVMDHMNR
RTLKLQNLKTVILDEADEMLNMGFREDIETILSGVPEERQTVLFSATMPPEIMAITKQFQ
KDPTVIKIAAKHRTVDTIEQYYYETAMGRKTDALRLLLLAYEPKSAMVFCNTKRTVDELT
EALCDKGIQAAGLHGDMKQMQRTQVMNAFKSGRIGVLVATDVAARGIDVNGIDLVFNYDL
PQDNEYYIHRIGRTGRAGKSGTALTLVSGRRQVFALRDIAKYTKAEIIQKALPTRADLAA
KKTQQLHDAVAQACAEQPSSRAEELLNRLTEEGYTAQQIAQVLLEEKLSASLQSIPEFDA
PQPIRREGKRGRSAVTTAKVDINIGRQQRIAPNFILGALVDATGLSGKDFGKIDIFDQHT
TVEVPEAEMDFVIDSLNAGKINGHKVTVKRYEGKETGSRSDFRGKSRNDGFNRRPRGRNT
DRRNEHKKQSRRFYG
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgggttttacagaaatgacagagatccaggaaaaaagcattccgctgatgatgcaggga
atagatctgatcggcagatccaacaccggcaccggcaagaccgccgcattcggcattccg
gcagtggaatccatctcccaggaggatccccgctcggttcaggttctgatcctctgcccc
acccgcgagcttgccatgcaggcctgtgaggaactgaaaaagctctcccggttcatgccc
tgggtacgaccctgtgccgtatacggaggtgccagcatggatcggcagatcggcgatctg
aaacggggcgcaaacattgtagtgggcacaccgggacgggttatggatcacatgaaccgg
cgcaccctcaagctgcagaatctgaaaaccgtgatcctggacgaggcagatgaaatgctc
aacatgggcttccgggaagacattgagaccatcctgtccggagtgccggaggaacggcag
accgtactgttttccgctaccatgcccccggagatcatggcaattacaaaacagttccag
aaggatccgacggtcatcaaaatcgctgcaaagcaccggactgtggataccattgagcaa
tactactatgagactgccatgggcagaaagacggatgcactccggctgctgctgctggca
tatgaaccaaagtccgctatggtgttctgcaacaccaagcgcacggtggatgagctgaca
gaggcactttgcgacaagggcatccaggcggcaggacttcacggagatatgaagcagatg
cagcgcacccaggtgatgaacgcattcaaaagcggcaggatcggcgttctggtggcaacg
gatgtggctgcccggggcattgacgtaaacggcatcgacctggtgttcaactacgatctg
ccccaggacaacgagtactatatccaccgcatcggcagaaccggcagagcaggcaaatcc
ggcaccgccctgaccctggtcagcggcaggcggcaggtgttcgccctgcgggatattgca
aagtataccaaagcggaaatcatccagaaggcactgcccacccgggcggatcttgcagca
aagaaaacacagcagctgcatgacgcagtggcacaggcatgcgccgaacaaccgtcttcc
agagcagaggaactgctgaaccggctgacggaggagggatataccgcacagcagatcgcc
caggtactgctggaggaaaagctgtccgcatccttacagagcattcccgaatttgacgca
ccccagcccatccgccgggaaggcaagcgtggcagaagcgccgttaccactgcaaaggtg
gatatcaacattggcagacagcagcgcattgcgcccaatttcatcctgggcgctctggta
gatgccaccggtctttccggcaaggacttcggcaaaattgatatcttcgaccagcacact
actgtggaagtgccggaagcggaaatggattttgtcattgattctctgaacgccggcaag
atcaacgggcacaaggtcaccgtcaagcgctacgagggcaaggaaaccggcagccgcagc
gacttccggggcaagtcccggaatgacggcttcaaccgccgtccccggggcaggaataca
gaccggcgaaacgagcataaaaagcaatccagacgattctacggataa
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