Ruminococcus champanellensis: RUM_19510
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Entry
RUM_19510 CDS
T02600
Name
(GenBank) helicase, putative, RecD/TraA family
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
rch
Ruminococcus champanellensis
Pathway
rch03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rch00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
RUM_19510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rch03400
]
RUM_19510
Enzymes [BR:
rch01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
RUM_19510
DNA repair and recombination proteins [BR:
rch03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
RUM_19510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
SH3_13
OB_YrrC
UvrD_C_2
Viral_helicase1
AAA_11
HHH_5
PIF1
AAA_22
Helicase_RecD
T2SSE
DEAD
TrwB_AAD_bind
SRP54
nSTAND3
ABC_tran
MeaB
UvrD-helicase
AAA_24
AAA_28
AAA_16
NPHP3_N
UvrD_C
AAA
DUF1923
PhoH
ResIII
AAA_29
DUF815
Thymidylate_kin
RecD_N
KTI12
NTPase_1
SLFN-g3_helicase
RsgA_GTPase
CbiA
KAP_NTPase
YqeC
cobW
Motif
Other DBs
NCBI-ProteinID:
CBL17987
UniProt:
D4LEE2
LinkDB
All DBs
Position
2059757..2061976
Genome browser
AA seq
739 aa
AA seq
DB search
MQEPEKRMLRLEGVVDKVLFFNEQNGYIVLELETDQSIETVVGELGEIEDGETLLVEGEY
ITHSKFGTQFKASYCERKLPSTAENIRKYLSSGTISGIGPSLAKRIVDVFGDETLEVMEH
QPEKLRTIKGISEKKCQEIAREVQKIFSLRTLMIYLSQYHIPARYAMKAFQQWGVNSRDV
IDGNPYALCGELVGLPFQKAEVLARSLRIALDSDQRILAGLQYLLTENTFSGHTCLPLDK
LQPLSCKYLGIGEQDFYANYNQALENQQLYEYKKGEREFVYLPEYYIAESYIADRIKVIL
EFSAPEDYDYEALIDLEEQEKQIKYESLQRKAITTALSRGLMVLTGGPGTGKTTTLNAII
SLYEKQGKKVLIAAPTGRAAKRISDLTGYEAKTIHRLLEVQFDSNERLTFKHNEKDPLDC
EVLVVDEMSMVDVLLFEHLLRALKLHCRIVLVGDSDQLPSVGAGNLLRDLIDGGCIPVIA
LQEIFRQAQQSCIVTNAHRIVRGEDPDLMQKQNDFFFLQRLKPEPACELVISLCRDRLPK
AYGFDPLNDIQVIAPARKGTLGVIALNQALQEALNPKKKSMAECKTALYTFRVGDKVMQT
RNNYDILWKKDGEQGTGIFNGDIGRILEINRAQMMATIDFDGRITPYPLDVLDQLELAYA
ITVHKSQGSEFEAVVIPILGGFEKLYYRNLLYTAVTRAKKLLILVGSRKKIEEMVHNNRR
TNRYSCLRHMLMQHEQGSN
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgcaggagccggaaaagcggatgctccgtttagagggcgttgtggataaggttctgttc
tttaatgaacagaacggatatattgttctggagctggaaacggatcagtccatagaaacc
gtagtgggggagctgggagagatcgaagacggagagacccttctggtggagggggagtat
atcacccacagcaagttcggcacacagttcaaggcatcctattgtgagcgaaagctgccc
agtacggcggagaatatccggaagtacctgtcctccggcaccatttccggcatcggtccc
tcccttgccaagcggatcgtggacgtattcggggatgagaccctggaggtcatggagcat
cagccggaaaagctgcgcaccatcaagggcatttcggagaagaaatgtcaggagatcgcc
cgggaggtgcagaaaatttttagtctgcgcaccctgatgatctacttatcccagtatcac
attcccgcccgttatgcgatgaaagcctttcagcaatggggtgtcaacagccgggatgtg
attgatgggaatccctatgcattgtgcggcgagttggtgggactgccttttcagaaagcg
gaggtgcttgcccgttcgttgcggatcgctctggattcggatcagcggattctggctggt
ttgcagtatttgctgaccgaaaacaccttcagcggacatacctgtctgcccctggataag
ttgcagcctctttcctgcaaatatctgggcattggagaacaggacttttatgccaactac
aatcaggctctggagaatcagcagctttatgagtacaaaaagggagaacgggagtttgtc
tacctgccggaatattatattgccgaatcctacatagcggatcggatcaaagtgatcctg
gaattcagtgctccggaggattatgactatgaggcgctgatcgacctggaggagcaggaa
aagcagatcaaatacgaatccctgcagcgcaaggcaatcaccactgccttgtcccgggga
ctgatggtgctgaccggcggccccggcaccggtaagaccaccacactgaacgccatcatc
tccctgtatgaaaagcagggaaagaaggtgctgattgccgcccccaccggcagagccgcc
aagcggatctcagatctgaccggctatgaggcaaagaccattcaccgcttgctggaggtg
cagtttgacagcaacgaacggctcaccttcaagcacaatgaaaaggatccattggactgc
gaagtgcttgtggtggacgaaatgtccatggtggatgtgctgttgtttgagcatctgctt
cgggcgctgaagctgcactgtcgtatcgttctggtaggggacagcgatcagttgccttcg
gtaggggctggaaacctgctgcgggatctgatcgatggaggctgcatcccggtaatcgct
ttgcaggagatcttccggcaggcgcagcaaagctgcattgtcaccaatgctcaccgaatc
gtccggggtgaggatccggatctgatgcaaaagcagaacgatttcttctttttgcagcga
ttgaagccggaaccagcctgtgaactggtgatttctctgtgccgggatcgtctgccaaag
gcgtatggctttgatccgctgaatgacattcaggtcatcgcacctgcccggaaggggaca
ctgggcgtcattgctctgaaccaggcgttacaggaggcgctgaacccaaagaaaaagagc
atggcagagtgcaagacggcgctgtacaccttccgggtgggggacaaggtgatgcagacc
cggaacaattacgatatcctctggaaaaaggacggagagcagggtaccggcattttcaac
ggagatatcgggcggatcctggagatcaaccgggcgcagatgatggcaaccattgacttt
gacgggcggatcacaccgtatcccctggatgtgctggatcagctggagcttgcgtatgcc
attacggttcacaaaagccagggcagtgagtttgaagcggtggtgatccccattctggga
ggctttgaaaagctgtactaccggaatctgctgtacacggcagtgacccgggcaaagaag
ctgctgatcctggtaggctcccggaagaagatcgaggaaatggtacataataaccgcagg
acgaaccggtactcctgcctgcggcacatgctgatgcaacatgaacagggaagcaattaa
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integrated database retrieval system
