Ruminococcus champanellensis: RUM_22110
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Entry
RUM_22110 CDS
T02600
Name
(GenBank) (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming)
KO
K02945
small subunit ribosomal protein S1
K03527
4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:
1.17.7.4
]
Organism
rch
Ruminococcus champanellensis
Pathway
rch00900
Terpenoid backbone biosynthesis
rch01100
Metabolic pathways
rch01110
Biosynthesis of secondary metabolites
rch03010
Ribosome
Brite
KEGG Orthology (KO) [BR:
rch00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
RUM_22110
09120 Genetic Information Processing
09122 Translation
03010 Ribosome
RUM_22110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03011 Ribosome [BR:
rch03011
]
RUM_22110
Enzymes [BR:
rch01000
]
1. Oxidoreductases
1.17 Acting on CH or CH2 groups
1.17.7 With an iron-sulfur protein as acceptor
1.17.7.4 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase
RUM_22110
Ribosome [BR:
rch03011
]
Ribosomal proteins
Mitochondria/ Chloroplast
Small subunit
RUM_22110
Bacteria
RUM_22110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LYTB
S1
S1_RRP5
Spt6_S1
FrsA-like
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
CBL18222
UniProt:
D4LF27
LinkDB
All DBs
Position
complement(2339737..2341722)
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AA seq
661 aa
AA seq
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MVQITVAKTAGFCFGVDRAVKLVYAELEKGGRVATLGPIIHNADVVNDMIAKGARIVSSV
EELEPGERVVIRSHGVGRKIYEQIAEKGNPLIDATCPFVARIHKIVAEQSAKGYFILIAG
DASHPEVQGIVGHCDENCAVFKDETELKCYIDKNSPKFKKKLAIVAQTTYNILLWGDCLK
QLPKDDPDILVFDTICNATASRQSDAARLSADTDVMVVVGGRNSSNTVKLYDVCRRNCKA
YHIENAGELFALDFSGAERIGITAGASTPAYIIKEVQTTMTDIAKNNLDEDIDFEAALEQ
SFKKIHTGERVKGYVVSVNNNEAIVDVGTKHTGYVPLDELTDDPSKKPADLVQPGDELDL
IVTKINDPEGYVLLSKRRVDELVGFENIAKAKEEGTILKGIVQNAVKGGLIVSCDGVRVF
VPASQSGLGRDADLSVLKNKPVELKIIEVNEQRRRAVGSIKAVAKAQKDAARAKFWETAE
VGQVFTGEVKSLTSYGAFVDLGGIDGMVHISELSWKRIKHPSEVVKVGDMLEVYIKALDP
EANRISLGYKKKEDNPWEQFLAKYHVGDVVDATVVSITQFGAFAQIMDGVDGLIHISQIA
NQRVDNVKDILSVGQQVQVKIVEIDPEKKRISISMRALLEDADAAKADEADEVAYSSEDA
E
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atggtacagatcacagttgccaaaaccgctggcttctgcttcggggtggaccgggcggtg
aagctggtgtatgcggagttggaaaagggcggacgggtggcaaccctggggcccatcatt
cacaatgcggacgtggtaaacgacatgatcgccaagggcgcccggatcgtcagctccgtg
gaggagctggagccgggagagcgggtggtgatccgctcccacggggtgggcaggaagatc
tacgagcagatcgccgaaaagggaaatcccctgatcgatgctacctgtccctttgttgcc
cggatccataaaatcgtggcggagcagtccgcaaagggatactttattctgattgccggg
gacgcatcccacccggaggtgcaggggatcgttggtcattgtgacgaaaactgtgcagtt
tttaaggacgaaaccgagctgaagtgttacattgataaaaattcaccgaaattcaaaaaa
aagcttgcaattgtcgcgcaaacaacgtataatatattattatggggtgactgtctgaaa
caattaccaaaggacgatcccgatatactggttttcgatacgatctgcaatgccaccgca
agccggcagtcggatgcggcacggctttccgccgatactgacgtcatggtagtggtaggc
ggacggaacagttccaacacggtcaagctttacgatgtctgccgccggaactgcaaggcg
taccatattgaaaacgcaggcgagctgtttgcgctcgatttttccggtgccgaacggatc
ggcatcacggccggagcatccaccccggcttatatcattaaggaggtacaaacaaccatg
actgacattgcgaaaaataatctggatgaggacattgatttcgaagcggctctggagcag
tccttcaaaaaaatacatacaggagagagagttaagggctacgttgtttctgtaaacaac
aacgaggcgatcgtagacgtgggcaccaagcacaccggctatgttcccctggatgaactg
actgacgatcccagtaagaagccggctgacctggtacagcccggtgatgagctggatctg
atcgtgaccaagatcaatgaccccgagggctatgttctgctgtccaagcgccgtgttgac
gagctggtaggctttgagaacattgcaaaggcaaaggaagagggcaccatcctcaagggc
atcgtacagaacgctgtgaagggcggtctgattgtttcctgcgatggcgtccgggtattc
gttcccgcatcccagtccggtctgggcagagatgctgacctgtccgttctgaagaacaag
ccggttgagctgaagatcattgaggtcaatgagcagcgccgccgtgcagtgggctccatc
aaggctgttgcaaaggcacagaaggatgctgcaagagcaaagttctgggagaccgcagag
gttggccaggtattcactggcgaagtgaagtctctgacaagctacggtgcatttgttgac
ctgggcggcattgacggcatggttcacatttctgagctgagctggaagcgcatcaagcac
cccagcgaggttgtcaaggtaggcgacatgctggaggtttacatcaaggctctggatccg
gaagcaaaccgcatttccctgggctacaagaagaaggaagacaatccctgggagcagttc
ctggcaaagtatcacgttggcgacgtggtagatgcgacggttgtttccatcacccagttc
ggtgcatttgcacagatcatggacggggtggacggtctgatccacatttcccagatcgca
aaccagcgtgttgacaacgtaaaggacatcctttccgttggtcagcaggttcaggtcaag
atcgtagagatcgatccggaaaagaagcgtatcagcatttccatgcgggcactgctggag
gacgctgacgcagccaaggctgatgaagctgacgaggttgcatactcttctgaggacgct
gaataa
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