Ruminococcus champanellensis: RUM_23050
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Entry
RUM_23050 CDS
T02600
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rch
Ruminococcus champanellensis
Pathway
rch03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rch00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RUM_23050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rch03400
]
RUM_23050
Enzymes [BR:
rch01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RUM_23050
DNA repair and recombination proteins [BR:
rch03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RUM_23050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
Glyco_tran_WecG
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
CBL18297
UniProt:
D4LFA2
LinkDB
All DBs
Position
complement(2448509..2451979)
Genome browser
AA seq
1156 aa
AA seq
DB search
MQFFKDTILELSAVQELQKYLNRGVSPISFSGVSHIHKAQLLAALACDTPGLVVTEDDAS
ARRLCDDINLMLGENRALPFPSKEMALTPVEGLSRSYEHMRLAALSAVQTGQCALLIASG
EALLQPTLPPELLEQCTITLHAGEDYDIGTLAKQLTGCGYVRCEKVEGPSQFSVRGALLD
VFPVQAAMPLRLEFWGDTLDSIAPFEVASQRRVDQQEQVTIPPAQETLVPQPELLAEKIE
ALAKSLRGKRAPELRIWLNRDAERLRGGEMLTDIDKYLPLLYPGTVTLLDYIPGTVWLSE
HMAVQERMRGAQTQYMEDHRMLLEAGTLCKGLEGYLTEVPRMQEMLTERVCVYLDTFLQG
GDRIPYRELLNIEAMQTAPWGGEIRQLTEDLSLYCKQGYRTMLVAGSEKTIGILCNDLRD
SGIPCDIAAPDSVCQPGRVLLMIGSLTGGFAYPENKTALITQAKTMHARKKAKKHKKGEE
IRALSDITAGDLVVHALHGIGRFVGIRKLELEGVTKDYITIQYAGKDVLYVPVTQLDMVS
RYIGTRDDDHVKLHKLSSVEWQKTRNNVKRAAKDMADELIALYAKREKAEGFAFLPDDEI
QAEFEERFPYVETDDQLQCIADIKADMQKPHPMDRLLCGDVGFGKTEVAMRAALKCVLSG
KQCAILVPTTVLARQHYQTALRRFEQMPVNVELLSRARNPKQQAEILRKLSTGRIDILIG
THRLIQKDVIFKDLGLAIIDEEQRFGVAHKEKFKESFAGVDVLTLSATPIPRTLNMAMSG
IRDMSVIEEPPQDRYPVQSYVVEYSDGVVAQALSRELKRGGQAYYLHNRVETIAACADRL
QRLLPDARIAYAHGQMTEEAMSDIWRQLVDHEIDILVCTTIIETGVDVPNVNTLIIEDAD
RLGLSQLYQLRGRVGRSNRRAYAYFTFRREKVLTEVATKRLNAMREFTQFGSGFRIALRD
LEIRGAGSILSGKQHGNMEAVGYDMYIRLLNEAIAEAKGEPIKKAAECTVDIQIDAHIPE
TYIESLTQRLEIYRRIAAVSTKLEKEDMLDELIDRYGDPPDSIVGLVDTALLRNTAAQLG
ITEIKQKRGMLLFYVEHPEPEQITALAAAYKGRIEFNSLAKPYIGVKAAKGEKTMKLMED
VLFAMWDAKPPQTPEN
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgcaatttttcaaggatactatattggaactgtctgcggtgcaggaactgcaaaagtac
ttgaaccggggcgtttcccccatatctttttccggcgtatcccacatccacaaggcgcag
ctgcttgccgccctggcgtgtgatacgcccggtcttgttgtaacggaggatgacgcctcc
gcccggcggctgtgcgacgacatcaatctgatgctgggggagaaccgggctttgcccttt
ccctccaaggaaatggcgctgaccccggtggaggggctgtccagaagctacgagcatatg
cggctggcggcgctttctgcggtgcagacgggacaatgcgccctgctgatcgcatccggc
gaggcactgctgcagcccaccctgccgccggagctgctggagcagtgtaccatcaccctc
cacgccggggaggactacgacatcggcaccctggcaaagcagctgaccggctgtggctat
gtccggtgtgaaaaggtggagggcccctcccagttttccgtccggggcgctttgctggat
gtattcccggtgcaggctgccatgcccctgcggctggagttctggggggataccctggac
agcatcgctccctttgaggtggcatcccagcgccgggtggatcagcaggaacaggtcacc
attccgcctgcccaggagaccctggtgccccagccggagctgttggcggagaagatcgaa
gccctggcgaagtccctccggggcaagcgtgcgccggagctgcggatatggctgaaccgg
gacgcagagcggctccgggggggcgaaatgctgacggacatcgacaagtacctgcccctg
ctgtatcccggaaccgtgaccctgttggattacattcccggcacggtgtggctcagcgag
catatggcggtgcaggagcggatgcgtggtgcgcagacccagtatatggaggatcatcgg
atgctgctggaagccggcaccctgtgcaagggactggaggggtacctgacggaggtgccc
cggatgcaggagatgctgacggagcgggtctgcgtgtatctggatacctttttgcagggg
ggcgaccggatcccctaccgggagctgctgaacatcgaagccatgcagaccgctccctgg
ggcggcgagatccggcagctgacggaggatctttccctgtactgcaagcagggctaccgg
actatgctggtggcaggctcggaaaagaccatcggcattctgtgcaatgacctgcgggac
agcggcattccctgcgacatcgccgccccggacagcgtgtgtcagccgggacgggtgctg
ctgatgatcggcagccttaccggtggctttgcctatccggagaataaaaccgctctcatt
acccaggcaaagaccatgcatgcccggaaaaaggcgaaaaagcacaaaaagggcgaggag
atccgtgccctgtcggatattaccgccggggatctggtggtgcatgcgctccacggcatc
gggcgctttgtggggatccggaagctggagctggagggggtcaccaaggactatattacc
atccagtatgcgggcaaggacgtgctgtatgtgcccgtcacccagttggatatggtgtcc
cggtacatcggcacccgggacgatgaccatgtaaagctccacaagctgtcctccgtagag
tggcagaagacccggaacaatgtgaagcgtgccgccaaggatatggcggatgagctgatc
gccctgtatgccaagcgggaaaaggcggagggctttgccttcctgccggatgacgagatc
caggcggaatttgaggaacggttcccctatgtggaaaccgacgatcagctgcaatgcatt
gcggacatcaaggcggatatgcagaagccccatcccatggatcggctcctgtgcggcgac
gtgggcttcggcaagacggaggttgccatgcgggcggcgctcaaatgcgtcctgtccggc
aagcaatgcgccatcctggtgcccaccaccgtgcttgcccggcagcattaccagactgcc
ctgcgccggttcgagcagatgcccgtgaatgtggagctgctgtcccgggcaagaaatccc
aagcagcaggcggagatcctgcggaagctgtccaccggcaggatcgatatcctcatcggc
acccatcggctcatccagaaggacgtgatcttcaaggatctgggccttgccatcattgac
gaggagcagcggttcggggttgcccacaaggaaaagttcaaggagagctttgcgggggtg
gatgtgctgaccctgtccgcaacccccattcccagaaccctgaatatggcaatgagcggc
atccgggatatgtccgtcattgaggagccgccccaggatcgctacccggtgcaaagctat
gtggtggaatactcggatggggtggtggcgcaggcattgtcccgggagctgaagcggggc
gggcaggcgtactatctgcacaaccgggtggaaaccattgccgcatgcgctgaccggctc
cagagattgctgccggatgcccggatcgcctacgcccacgggcagatgaccgaagaagcc
atgagcgatatctggcggcagctggtggatcacgagatcgacatcctggtgtgtaccacc
atcattgagaccggtgtggacgtgcccaacgtaaacacgcttattatagaggatgcggat
cgactgggactgtcccagttgtatcagctacggggcagagtgggacgctccaaccggcgt
gcctatgcctacttcaccttccgccgggaaaaagtgctgacggaggttgccaccaagcgg
ctcaatgccatgcgggaattcacccagttcggcagcggtttccgcattgctttacgggat
ctggagatccggggcgccggcagcattctcagcggcaagcagcacggcaatatggaggca
gtggggtatgatatgtatatccggctgctgaatgaagccattgcagaggcaaagggtgag
cccatcaagaaggcggcggagtgtacggtggatatccagatcgacgcccatatcccggag
acgtatattgaaagcctgacccagcggctggagatctaccggcggatcgccgccgtgtcc
accaaactggagaaggaggatatgctggacgagctgatcgaccggtacggagatcctccg
gattctattgtgggactggtggatacggcgctgctgcggaatacggcggcgcagctgggc
attacggagatcaagcagaagcggggcatgctgctgttttatgtggagcatccggagccg
gagcagatcacggcactggctgcggcatacaaggggcggatcgaattcaacagtctggca
aagccctatatcggtgtgaaggcagccaagggagaaaaaaccatgaagctaatggaagat
gtgctgtttgccatgtgggatgcaaagcccccgcagaccccggaaaactga
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