Ruminococcus champanellensis: RUM_23750
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Entry
RUM_23750 CDS
T02600
Name
(GenBank) exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
rch
Ruminococcus champanellensis
Pathway
rch03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rch00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RUM_23750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rch03400
]
RUM_23750
Enzymes [BR:
rch01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
RUM_23750
DNA repair and recombination proteins [BR:
rch03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
RUM_23750
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
Motif
Other DBs
NCBI-ProteinID:
CBL18366
UniProt:
D4LFH1
LinkDB
All DBs
Position
complement(2523361..2524131)
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AA seq
256 aa
AA seq
DB search
MKLISWNVNGLRACREKGFEAFFAQEDADFFCIQETKLQAGQIQLELPGYNQYWHYADKK
GYSGTAVFTKHIPLSVQRDFGLPAHNGEGRVLTLEYPDFYLVNAYVPNSKRELLRLDYRM
EWEDALRQYLLGLDARKPVIYCGDLNVAHREIDLKNPKSNRRNAGFTDEERGRLSTLLDS
GFTDTFRLLYPDTAGAYTWWSYMFHAREKNAGWRIDYFIVSNRIAPLVQDSLIYKDVLGS
DHCPVGLLVHGLRTEA
NT seq
771 nt
NT seq
+upstream
nt +downstream
nt
atgaaactgatctcatggaacgtaaacggcttgcgggcatgccgggaaaagggctttgag
gcattttttgcccaggaggatgcggactttttctgcatccaggaaaccaagcttcaggcg
gggcagattcagctggagctgcccggctacaatcaatactggcattatgcggacaaaaag
ggctactccggcacggcggtattcaccaagcacatccccctgtccgtgcagcgggacttc
gggcttccggcgcacaacggagagggacgggtgctgacgttggagtatccggatttttac
ctggtgaatgcctatgtgcccaactccaagcgggagctgctgcggctggattaccggatg
gagtgggaggatgccctgcggcagtacctgttggggctggacgccaggaaaccggtgatc
tactgcggtgatctgaacgtggcgcaccgggagatcgatttgaaaaatcccaagtccaac
cggcggaatgccggctttacggacgaggagcgggggcggctctccaccctgctggacagc
ggttttacggataccttccggctgttgtatccggacactgccggggcatacacctggtgg
tcctacatgttccacgcccgggagaagaacgccgggtggcgcatcgactatttcatcgta
tccaaccggatcgctcccctggtgcaggacagcctgatctacaaggacgtgctgggaagc
gaccactgcccggtgggattgctggtgcatggacttcgtacagaagcataa
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integrated database retrieval system
