KEGG   Methanocella arvoryzae: LRC269
Entry
LRC269            CDS       T00526                                 
Name
(GenBank) conserved hypothetical protein
  KO
K07573  exosome complex component CSL4
Organism
rci  Methanocella arvoryzae
Pathway
rci03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rci00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LRC269
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rci03019]
    LRC269
Messenger RNA biogenesis [BR:rci03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     LRC269
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     LRC269
SSDB
Motif
Pfam: ECR1_N EXOSC1 ECR1_N_2 OB_RRP5_4th S1 HypA RRP4_S1 Trm112p Auto_anti-p27 Zn_ribbon_PaaD
Other DBs
NCBI-ProteinID: CAJ35251
UniProt: Q0W8P2
LinkDB
Position
complement(3007877..3008440)
AA seq 187 aa
MTENDFVVPGDLVGTSEEYLPGSGTYEENGNIYADITGKIAINKKERAVYIEPAVHAPPV
PREGDIVIGRVTDIKGSVALVELSRIKGHLDREIAGNTSAAIHISNVKDSYVQDLAQEFG
YQDIVKARVIDTKNMRLSTVDKSLGVLTSMCSRCRVPLKFDNGKLKCPHCERRETRKLSS
DYGKGII
NT seq 564 nt   +upstreamnt  +downstreamnt
ttgactgagaatgattttgtcgtgcccggcgatctggtaggcacctctgaagaatacctg
ccaggcagcggaacgtacgaggagaacggaaatatatacgccgacatcaccgggaaaatt
gccatcaacaagaaagagagagcggtctacatagaaccggcagtccacgcgccgccagta
cccagggaaggcgacatcgtgatcggccgggtaaccgacatcaagggttcggtagccctc
gtggagctttcgaggatcaagggacacctggaccgggaaatcgccggcaacacctccgcc
gccatccacatatcgaacgtgaaggactcttatgttcaggatctggcccaggagttcggg
taccaggacatcgtcaaggccagggttatcgacaccaagaatatgcggctgtccacggtg
gacaagagcctcggcgtgctaacttcaatgtgctccaggtgcagggttccgctcaagttc
gacaacggcaagctgaagtgcccccactgcgagaggcgggaaaccaggaaactgtcgtcc
gactacggcaaaggcatcatataa

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