Methanocella arvoryzae: LRC345
Help
Entry
LRC345 CDS
T00526
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rci
Methanocella arvoryzae
Pathway
rci03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rci00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LRC345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rci03019
]
LRC345
03009 Ribosome biogenesis [BR:
rci03009
]
LRC345
Enzymes [BR:
rci01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LRC345
Messenger RNA biogenesis [BR:
rci03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LRC345
Ribosome biogenesis [BR:
rci03009
]
Prokaryotic type
rRNA helicases
LRC345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SbsC_spectrin-like
Cas3-like_C_2
AAA_22
SBF_like
Motif
Other DBs
NCBI-ProteinID:
CAJ35316
UniProt:
Q0W8H7
LinkDB
All DBs
Position
complement(2937217..2938710)
Genome browser
AA seq
497 aa
AA seq
DB search
MVKFTELNLTPSIVRAVHEMGFEEATPIQEQAIPLAMEGKDLIGQARTGTGKTAAFGIPM
VEAIRPTSKGVQGLVVVPTRELAVQVAEELTRIGKVRGIRSVAIYGGQDFRSQVKALEEL
PHIVVGTPGRLLEHMRREYVRTSDIRIAVLDEADKMLDMGFIDEAEKILKKLPERRQTLL
FSATLSPPVQMLARKYLKDPELIEFEEEGITVPTTVQYYIEMPEKQKFEALTRLLDQEKP
ELAIVFVATRIRVGELAKALVERGYHALGLHGDLLQYQRENTLDKFKAGEVSILVATDVA
ARGLDIQGVTHVYNFDIPRDPDSYVHRIGRTGRAGNAGTATTFVTPKDKTALEAIEQAID
HQITSKPAPGGAESTEKNIEAVIEKIRGEIEIRDLSFYRDYAESLLNSGDPATILAAALR
ILSKAEEKPQIRLTEIPEPVAPDRKAEKGHGKGTGHPKKGSYSKGYGHKDEGDRKKAGAQ
KPKGSAFKQFAKKGGKK
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atggtcaagtttacggagttaaacctcacccccagcatcgttagagcagtccatgaaatg
ggcttcgaagaagccacccccattcaggagcaggcgatacccctggccatggaaggaaaa
gacctgataggtcaggcccgcacaggcacgggtaagacggctgcgttcggcattccgatg
gtggaggccatcaggccgacctcgaaaggcgtacagggcctggtagtggtgccgacgaga
gaactggcagtacaggtggcagaagagctgacccggataggcaaggtcagaggcattcgc
tctgtcgccatctatggcggccaggacttcaggtcgcaggttaaagccctggaggaactg
ccacacatcgtcgtgggtaccccgggccgcctgctggagcacatgaggcgggagtatgtc
aggaccagcgatatccggatcgctgtcctcgacgaagccgataagatgctcgacatgggg
ttcatcgacgaggccgaaaaaattctcaaaaagctgcccgaaaggcgccagacgctgctg
ttttcagccacgctgtcgcccccggtgcagatgcttgcccggaagtacctgaaagaccct
gaactgatcgaatttgaggaagagggcatcactgtgcccaccacagtgcagtactacatc
gagatgccagagaagcaaaagtttgaggcgctcacgcgcctgctcgaccaggaaaagccg
gagctggccatcgtgttcgtcgcgacccggatcagggtaggggaactggctaaagccctc
gtggagcggggttatcacgcgctgggcctccacggggatttgctccagtaccagcgggag
aacacactggacaagttcaaggccggcgaagtcagcattctggtcgcgaccgacgtcgct
gcaagagggctggatatccagggcgtcacccacgtctataacttcgacataccccgggat
ccggatagctacgtgcacaggatcggccgcacgggcagggccgggaacgcgggcaccgct
actacttttgtcacgccgaaggataagacggccttagaggccatcgaacaggcgatcgat
caccagatcacaagtaagcccgcccccggcggcgctgagtctactgagaagaacatagag
gcggtgattgagaagatccggggggagatagagatcagggacctgtcgttttaccgggac
tacgctgagagcctgctcaattcaggtgacccggcaacgatactggccgcagccctgaga
attctgagcaaggcggaagaaaagccccagataaggctgacggagatccccgagccggtc
gcccctgacagaaaggcagagaaaggccatggcaagggaacaggacacccaaagaagggg
agctatagtaaaggctatggccataaagacgaaggcgaccgtaagaaggccggcgctcag
aagcctaaaggcagcgcatttaaacagttcgcgaagaagggcgggaaaaagtag
DBGET
integrated database retrieval system
