Methanocella arvoryzae: RCIX1130
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Entry
RCIX1130 CDS
T00526
Symbol
cdc48-3
Name
(GenBank) cell division cycle protein 48
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
rci
Methanocella arvoryzae
Pathway
rci04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
rci00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
RCIX1130 (cdc48-3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rci03019
]
RCIX1130 (cdc48-3)
03009 Ribosome biogenesis [BR:
rci03009
]
RCIX1130 (cdc48-3)
04131 Membrane trafficking [BR:
rci04131
]
RCIX1130 (cdc48-3)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rci04147
]
RCIX1130 (cdc48-3)
Messenger RNA biogenesis [BR:
rci03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
RCIX1130 (cdc48-3)
Ribosome biogenesis [BR:
rci03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
RCIX1130 (cdc48-3)
Membrane trafficking [BR:
rci04131
]
SNARE
SNARE associated proteins
Others
RCIX1130 (cdc48-3)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
RCIX1130 (cdc48-3)
Exosome [BR:
rci04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
RCIX1130 (cdc48-3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
RuvB_N
AAA_2
TIP49
CDC48_2
AAA_5
AAA_22
AAA_14
ABC_tran
nSTAND3
AAA_33
AAA_28
IstB_IS21
RNA_helicase
AAA_18
AAA_24
Sigma54_activat
NACHT
Mg_chelatase
NPHP3_N
Parvo_NS1
AAA_7
ATPase
ATPase_2
SLFN-g3_helicase
AAA_lid_PRS2_C
AAA_17
Zeta_toxin
NB-ARC
Sigma54_activ_2
PhoH
ResIII
KAP_NTPase
TsaE
Vps4_C
DUF815
Bac_DnaA
ORC-CDC6-like
DUF6276
Motif
Other DBs
NCBI-ProteinID:
CAJ36438
UniProt:
Q0W5A5
LinkDB
All DBs
Position
1780333..1782609
Genome browser
AA seq
758 aa
AA seq
DB search
MQKEEKAKLRLKVAEADKREVGRGIARINERHIKEIGVSYGDIIQITGRRTTSAIVGSAF
PSDMHLDIIRVDGIVRHNAGTTLGDYVEISRARWNEARKVVLTPVQKGIRIYASPDSLQA
SFLNRPVSQGDIVSTSTYNPPSQSFNSNLMFEEFFRDFFSNPSLGLGEVKLAVASTVPAG
IVKITEVTEIQLMPEATEISRTEVPEVTYEDLGGIRDAIQKIREMIELPLKYPELFNRLG
IDPPKGVLILGPPGTGKTLLAKAVANESDAYFTSINGPEIMSKYYGESEQHLRDVFKEAE
NNAPAIIFIDELDSIATKRAEVTGEVERRVVAQLLSLMDGLKSRKNVIVIGATNRPEAID
NALRRPGRFDREIELRVPDKAGRKEILQIHTRSMPLTPDVDLDELSDRTYGFVGADIAAL
CKESAMNVLRRVLPNIDMKEQSLPVQVLDKLRVTRQDFEEALRIVQPSALREIMIEVPNV
TWGDIGGLESVKMLLREAVEWPLRYADSFRRIGVEAPKGVLLYGPPGTGKTLLAKAIANE
SQANFITAKGSDLLSKWYGESEKHISEVFKKARQVSPAVVFLDELDALAPVRGGASGEPR
VTERIVNQLLSELDGLEELRGVVVIGATNRPDIIDPALLRPGRFDEIILVPVPDRGARRE
IFKVHMRRMPVAPDVKLEELVDRTDMYTGADIAYLCKKAGRLALREDLKATVVRKKHFME
ALKTTEPSVTDEAMRFYQNVGGELKRKGSKEIEKSMYL
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
gtgcagaaagaggagaaagctaagctgcggctgaaggtggcggaagcagataagcgcgag
gtcgggaggggcatcgcgaggatcaacgagcgccacatcaaggaaatcggcgtctcgtac
ggcgacatcatccagatcacgggccgccggaccacctcggccatcgtgggcagcgccttt
ccctcggacatgcacctggacatcatcagggtggatggcatcgtccggcacaacgcgggg
actactttgggggactatgtggagatttcccgcgcccggtggaacgaggccaggaaagtg
gtgttgacgcctgttcagaaaggcatacgcatctacgcatctcccgacagcctgcaggcc
tcatttctcaaccggccggtgtcccagggggacatcgtgtccacgtcgacgtacaacccg
ccgagccagtcgttcaactccaacctgatgttcgaggagttcttccgcgacttcttctcc
aacccttcgctgggcctgggcgaggtcaagctggccgtggcgtcgaccgtcccggcgggc
atagtaaagataaccgaggtgactgaaattcagctgatgccggaggcgaccgagatctcc
aggactgaggtgccagaggtgacctatgaagacctggggggcatcagggacgccatacag
aagatcagagagatgatcgagctgccgttgaagtaccccgagctgttcaacaggctgggc
atagatcccccgaagggggtgctgatcctggggcccccgggcaccggcaagacgctgctg
gccaaagctgtggctaacgagtcggacgcgtacttcacttccatcaacggcccggagatc
atgtcgaagtactacggcgagtccgagcagcacctcagagacgtgttcaaggaggcggag
aataacgctcccgccatcatcttcatcgacgagctggactccatcgccaccaagcgggcg
gaagttaccggggaggtggagcgcagagtggtggcccagctattgtccctcatggacggc
ctgaagtccaggaagaacgtcatcgtcatcggcgcgaccaaccggccggaggcgatcgac
aacgcgctgcgccggccgggcaggttcgaccgtgaaatcgagctcagggtgccggacaag
gccggaaggaaggagatcctgcagatccacacgaggagtatgccgctcacccccgacgtg
gacctggacgagctgtccgaccggacgtacggcttcgtgggcgcggacatcgccgcgctc
tgcaaggagtcggccatgaacgtcctgcgccgggtgctcccgaacatcgacatgaaagag
cagtctctgcccgtgcaggtactggacaagctgcgcgtcacccgccaggacttcgaggag
gcgctgcggatcgtccagccctccgcgctgagagagatcatgatcgaggtgcccaacgtc
acctggggagacatcggaggcctggagagcgtcaagatgctcctgcgggaagccgtggaa
tggccgctgagatacgcggactcgttccggcgcataggcgtcgaagccccgaagggcgtg
ctgctgtacggcccgcccggcacgggcaagacgctgctggccaaggcgatcgccaacgag
agccaggcgaacttcatcacggcgaagggcagcgatctgctgtccaagtggtacggcgag
tcggagaagcacatcagcgaggtgttcaagaaggcccggcaggtctctcccgcggtcgtc
ttcctcgacgagctggacgcactcgccccggtgaggggcggggccagcggagagcccagg
gtcacggaaaggatcgtcaaccagctcctgtccgagctggacggcctggaagagctcagg
ggcgtcgtcgtcatcggcgcgaccaaccggccggacatcatcgaccccgccctgctgcgg
ccgggccggttcgacgagatcatcctggtgccggtgcccgaccggggcgcccggagggag
atcttcaaggtgcacatgcgccgcatgcctgtcgccccggacgtgaagctggaagagctg
gtggacaggaccgatatgtacacaggcgcagacatcgcctacctgtgcaaaaaagccggc
aggctcgcgctcagggaagacctgaaggcgaccgtcgtcagaaagaagcacttcatggaa
gccctgaagaccaccgagccttcggtaaccgacgaggctatgagattctaccagaacgtg
ggcggagaactgaaacggaagggcagcaaggagatcgagaagagcatgtacttgtag
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