Methanocella arvoryzae: RCIX2102
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Entry
RCIX2102 CDS
T00526
Symbol
recJ
Name
(GenBank) putative single-stranded DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rci
Methanocella arvoryzae
Pathway
rci03410
Base excision repair
rci03430
Mismatch repair
rci03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rci00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RCIX2102 (recJ)
03430 Mismatch repair
RCIX2102 (recJ)
03440 Homologous recombination
RCIX2102 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rci03400
]
RCIX2102 (recJ)
DNA repair and recombination proteins [BR:
rci03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
RCIX2102 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
RCIX2102 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RCIX2102 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH_CID
DHHA1
DHH
ADH_zinc_N
Motif
Other DBs
NCBI-ProteinID:
CAJ37237
UniProt:
Q0W306
LinkDB
All DBs
Position
complement(1003860..1005245)
Genome browser
AA seq
461 aa
AA seq
DB search
MERFSQAAERCADLIKKSDELLVVSHIDADGLTSAGIICTALQRLGKGYDTRFVKKLDAE
ALKQIAAIAGKRTVIFTDLGSGAIDQINELGLTAVIADHHQPKPSDYPYHLNPHLVGLNG
ATDISGSGVTFLLALKLGPNEDLSSLAIVGAVGDLQDMRTNALVGVNRQILTLGVSGGYL
SFEKDIKLFGRQTRPVYKLLQYCSDPYMPGLSGCEEACVTFLENAGIPVKAESWRRWIDL
SRDEKTRVISSLFQHCMACGMPSHKIQRLVGEVYTLCKEEPGTEMRDASEFSTLLNATAR
YEYAETGLAICTGDRGEAFHYARDLLEQHRRNLVNGLNYVSDHGVTRLNNVQYFDARSEI
RETIVGIIAGMSSSLDCVSRGMPIVGLATSTEGIKVSARGNHDLIMRGLNLARAISEAAA
AVGGAGGGHDIAAGATIPAGKEVEFMALLDQKIGEQIKSKL
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atggaacgatttagccaggcagcggagcggtgtgcggatctgattaaaaagagcgacgag
ctgctcgttgtctctcacattgacgcggacgggctgacctcagcgggtatcatctgtact
gcgctgcagaggctcggcaagggctacgatacccggttcgtaaagaagctggacgcggag
gcgctgaagcagatagcggccatcgccgggaagcgtactgtgatcttcaccgacctcggg
agcggggcgatcgaccagatcaatgagctggggctgacagcggtgatcgccgatcaccac
cagccgaagccgtccgactacccgtaccatctgaacccgcacctcgtcgggctgaacggg
gctaccgatatcagcggctcaggagtaacgttcctgctggcgctcaagctcggccccaac
gaggacctttcttcgctggccatcgtcggggccgtcggcgatctgcaggacatgcgcacg
aacgcgctggtcggggtgaaccggcagatcctgacacttggggtatcgggcggctacctg
tcgttcgagaaagacatcaagctcttcggccggcagacccgccctgtctataagcttctc
cagtattgctcggacccgtacatgcccgggttgagcgggtgtgaagaggcctgcgtcacc
ttcctggagaacgcgggtatcccggtcaaggcggagtcttggaggcggtggatcgacctg
agccgggacgagaagacccgggtcatctccagcctgttccagcactgcatggcctgcggt
atgccctcccataaaatccagcggctggtgggcgaggtatataccctgtgcaaggaagag
ccaggcactgaaatgcgggacgcatccgagttctctacgctgctgaacgctaccgcccgg
tacgagtacgccgaaaccggcctggccatctgtacgggcgaccggggcgaggctttccac
tacgcccgggacctgctcgagcagcaccgccgcaacctggtcaacggcctgaactatgtc
agcgaccatggcgtcacccggctgaataacgtccagtacttcgacgccaggagcgagatc
agagaaacgatcgtaggcatcatcgccggcatgagcagcagcctggactgcgtcagccgg
gggatgcccatcgtcgggctggccacgtcgaccgaggggatcaaggtttcggcgaggggc
aaccatgatttgattatgcgcggcctcaacctggcccgggccatatccgaagctgcagcc
gccgtaggcggcgccgggggaggccacgacatcgccgccggagctacgatccccgcaggt
aaagaggtagagttcatggctctgctggaccaaaaaatcggggaacagataaagagcaag
ctataa
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