Methanocella arvoryzae: RCIX2125
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Entry
RCIX2125 CDS
T00526
Symbol
rrp42p
Name
(GenBank) putative exosome complex exonuclease 2
KO
K12589
exosome complex component RRP42
Organism
rci
Methanocella arvoryzae
Pathway
rci03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rci00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RCIX2125 (rrp42p)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rci03019
]
RCIX2125 (rrp42p)
Messenger RNA biogenesis [BR:
rci03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
RCIX2125 (rrp42p)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
RCIX2125 (rrp42p)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
CAJ37256
UniProt:
Q0W2Y7
LinkDB
All DBs
Position
complement(988853..989635)
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AA seq
260 aa
AA seq
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MSEDVIAEIKRDYIYSLANQGDRADGRKFDEFRAISVETGVINKAEGSARVKIGDSQVVV
GVKIQPGEPFPDTPDSGVIITNLELVPLASPTFESGPPREDAIELARVVDRGVRESGAID
LSKLCIESGQKVWMVFIDVHVLDHDGNLMDAASLGAIAALKATKIPNSKFGLGEDVKLPL
NDVPIGVTAVNIGGAIMLDPSLDEESVAPCKLTVITNKEGAISGMQKSGVGTLTPDQINH
IIRLAKEKANVLREKLEGIQ
NT seq
783 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaagacgttatcgcagagatcaagcgagactatatatacagcctcgccaatcag
ggtgacagggcggacggtcggaagttcgacgagttccgcgctatctcagtggagaccggc
gtaatcaacaaggccgaaggctccgccagggtaaaaatcggcgactcgcaggtcgtcgta
ggtgtcaagatccagcccggcgagccgttcccggacaccccggactccggtgtcatcatt
actaacctggagcttgtgccgctcgcatccccgacgttcgagagcgggcctccgagagag
gacgcgattgagctggcacgtgtcgtagaccgtggggtgcgcgaatcaggcgcaattgat
ttatctaagttatgtattgaaagtggtcagaaagtctggatggtcttcatcgatgttcat
gtacttgatcacgatggcaacctgatggacgcagcctcgctcggcgctatcgcagcgctc
aaggcaacgaagatcccgaactccaagtttggcctcggcgaggacgtcaagctgcccctg
aacgacgtgccaatcggcgttacggcggtcaacatcggcggcgcaatcatgctcgatccg
agcctggacgaggaaagtgtcgcgccctgcaagctgacggtgatcaccaacaaggaaggc
gccatctcgggcatgcagaagagcggtgtcggcacgctgacaccagatcagattaatcat
atcattcgcctcgcgaaagagaaggcgaacgtactcagagaaaaactggagggaattcag
taa
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