Methanocella arvoryzae: RCIX2309
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Entry
RCIX2309 CDS
T00526
Symbol
topA-1
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
rci
Methanocella arvoryzae
Brite
KEGG Orthology (KO) [BR:
rci00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rci03032
]
RCIX2309 (topA-1)
03400 DNA repair and recombination proteins [BR:
rci03400
]
RCIX2309 (topA-1)
Enzymes [BR:
rci01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
RCIX2309 (topA-1)
DNA replication proteins [BR:
rci03032
]
Prokaryotic type
DNA Topoisomerases
RCIX2309 (topA-1)
DNA repair and recombination proteins [BR:
rci03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
RCIX2309 (topA-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Zn_ribbon_Top1
Fusion_F0
Motif
Other DBs
NCBI-ProteinID:
CAJ37410
UniProt:
Q0W2I3
LinkDB
All DBs
Position
complement(827764..830067)
Genome browser
AA seq
767 aa
AA seq
DB search
MHLIITEKHDAASKIAAILFKDRTPERINGVPAYRSKAADALVIGLAGHILELDFPEAYQ
KWSAFPPRELIRAQVVTYPSKKDLVGALATLATKVTRVTIATDYDREGEMIGVEAYNIIK
KISSPTFDRVRYSSFTKEEITKAFASPTAVDFDLAAAGECRQEIDLVWGAALTRFVSIAG
NKFGKDFLSVGRVQTPLLALIVDREKEIQAFTSKPYWEIVATLLKEDRSFTASHKRGRFD
KKEEAAAIHKKLGKTAVVKDVKADRKKEQPPIPFNTTEFVKAASALGFTAASAMQIAEAL
YINGWISYPRTDNTVYPDTLNLKDLLGIFKTSPDFAKSALELLAMPSITPTRGKVETKDH
PPIYPVACAMRKDLDDRQWKLYELVVRRYFATLSPACEWETIKAEIDISGEPFAANGKQL
AVPGWRKHYPYGLQKDELLPPLKAGDPLLVRKADLLEKKTEPPKRYGQGKLVQMMEDLGL
GTKATRHEALAKLYQRGFIEGNPPQPTATGISLIDALKAYASAITSNAMTSKLERDMDAI
AASQLKKAAVAKESREMLDKVFDQLEKNRLEIGRILRSGFAADSDIGPCPLCGSALVVRE
RKSDKNKFIACSGFPNCRNTYNVPPGTLKFDKTVCEKHRLHHVKVTPPSTKGPDGKAVRG
KAYDFGCPACRKENPSVMPPCVKTCKPDLRAMIPHGRESGELVTTEAHRVTGLPQRHRDA
QRFTEIFTIIIMMLTLRLQLLFFCPSRYPITSPVTIPVPLQQGSGRG
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
atgcacctgatcatcaccgagaagcacgacgcggccagcaagatcgctgccatcctgttc
aaggacaggacgccggagcgcatcaacggcgtgccggcatacagatctaaggcagcggat
gccctggtgatcggcctggcagggcacatcctcgagctcgacttccccgaggcctaccag
aagtggagcgcatttccgcccagggagctgatcagggcacaggtggtcacctacccgtcg
aaaaaggacctcgtcggagcacttgctacgctggccacaaaggtgacccgcgtcaccatt
gccactgactatgacagggaaggcgagatgatcggcgtcgaagcctataacatcatcaag
aagatctccagcccgacgttcgaccgggtccggtacagctctttcactaaagaggagatt
acgaaagcctttgccagccccactgcagtcgacttcgatctggcggcagccggggagtgc
aggcaggagatagatctcgtatggggcgcagccctgacccgcttcgtctccatcgccgga
aacaagttcggaaaggactttttatccgtgggccgggtgcagacgccgctgctggcattg
atcgtagaccgggaaaaggagattcaggcgttcacctcgaagccctactgggaaatcgta
gccacgctgctgaaagaagaccggtctttcacggcttcccataagcgggggcggttcgac
aaaaaggaagaagctgctgccatccacaaaaagctcggcaaaactgcggtggtcaaagac
gtaaaagcagaccggaaaaaggagcagcccccgatccccttcaacacaactgagttcgtc
aaggcagccagcgcgctgggatttaccgcggccagtgccatgcagatcgccgaagctctg
tacattaacggctggatctcttatccccgtaccgacaacaccgtctaccctgatactttg
aatctcaaagacctgctcggaatattcaagaccagccccgacttcgcgaagagcgcgctt
gaactgctggcgatgccatcgataacgcctacgaggggcaaggtcgagaccaaagatcac
ccgcctatctatccggtagcctgcgcgatgcgaaaggacctcgacgacaggcagtggaag
ctttacgagctcgtggttcgccgatactttgcgacgctatcgcctgcatgtgagtgggaa
acgatcaaggcagagatcgatatctcgggagagccgttcgcagctaacggcaagcagctc
gcagttcccggctggaggaaacactatccctacggcctgcagaaggacgagctattgcct
cctcttaaggccggcgatcctctcctggtccggaaagccgatctactagagaagaagacc
gagccgcccaagagatatggccagggcaaactggtccagatgatggaagacctcggcctc
ggcaccaaggccacgaggcacgaggcgctggcgaaactgtaccagaggggcttcatcgag
ggcaacccgcctcagccgacggccaccggaatttcgctgatcgacgcgctgaaagcttat
gcctcggctataaccagtaatgcaatgaccagtaagctggagcgggatatggacgccatc
gcagccagccagcttaagaaagctgccgtcgcgaaggagtcccgggaaatgttggacaag
gtcttcgaccagctggagaaaaaccgcctcgaaatcggccgcatcctccgctcaggcttt
gccgcggacagcgacatcgggccatgcccgctgtgcggttccgcgctcgtggtcagggag
aggaaatcggacaagaacaagttcatcgcgtgctccggcttcccgaactgccgcaatact
tacaacgtcccgccaggtaccctcaaattcgacaagaccgtctgcgaaaagcaccggctc
caccacgtcaaggtgaccccgccttcgaccaaagggcctgacggcaaggcagtcaggggc
aaggcttacgacttcgggtgcccagcctgtagaaaggaaaacccctcggtaatgcccccc
tgcgtcaaaacctgtaaacccgacctcagggcgatgataccccacggccgggaatccgga
gaactggtgaccactgaggctcacagagtgaccggtttaccacagaggcacagagacgca
cagaggttcacagagatttttacaatcatcattatgatgctcacgctgcgcttacagctc
cttttcttctgtccttccagatatcccataacgtcaccagtaacaataccggtcccattg
caacaagggtcaggtagaggatga
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