KEGG   Methanocella arvoryzae: RCIX607
Entry
RCIX607           CDS       T00526                                 
Symbol
fen
Name
(GenBank) flap structure-specific endonuclease
  KO
K04799  flap endonuclease-1 [EC:3.1.-.-]
Organism
rci  Methanocella arvoryzae
Pathway
rci03030  DNA replication
rci03410  Base excision repair
rci03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rci00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    RCIX607 (fen)
   03410 Base excision repair
    RCIX607 (fen)
   03450 Non-homologous end-joining
    RCIX607 (fen)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rci03032]
    RCIX607 (fen)
   03400 DNA repair and recombination proteins [BR:rci03400]
    RCIX607 (fen)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:rci04147]
    RCIX607 (fen)
DNA replication proteins [BR:rci03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    RCIX607 (fen)
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     RCIX607 (fen)
DNA repair and recombination proteins [BR:rci03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     RCIX607 (fen)
Exosome [BR:rci04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   RCIX607 (fen)
SSDB
Motif
Pfam: XPG_I XPG_N 5_3_exonuc
Other DBs
NCBI-ProteinID: CAJ36013
UniProt: Q0W6I0
LinkDB
Position
2199939..2200961
AA seq 340 aa
MGVDLGGLVEPREIELKELNNRTVAVDAYNTLYQFLSIIRQQDGAPLADDRGNVTSHLSG
IIYRVTNLVEEGMKPVFVFDGKPPSFKAETIKARAEVREAARQMYEAAKAAGSAEAYKYA
QASTSINRQIVDDAKVLLGYMGIPFIVAPSEGEAQAAYMVSRGAADYVGSQDYDSLLFGA
PRVVRNIAITGKRKVPRKNIYMDVKPEVIELQEVLATLGLTREELIDMAILVGTDYNPGI
FKVGPKTALKLVKKHGDNMPAILDELGQTIENWEAIKEFFLHPTVTDDYQVKWGKPEPAK
IKEFLCEEHSFSVDRVDKVLERLTTAVSETTKQKTLSSWF
NT seq 1023 nt   +upstreamnt  +downstreamnt
atgggagtcgatttgggcggccttgtggagccgagggagatcgagctgaaagagctgaat
aaccgcacggtggcggtcgacgcctataatacgctctaccagtttttaagcatcatccgc
cagcaggacggggctccgctcgcggatgaccggggtaatgtaacgtctcacctatcgggc
atcatctaccgtgtgactaaccttgtcgaggagggcatgaagccggtcttcgtgttcgac
gggaagcccccgtcgttcaaggcggagacgatcaaggcccgggcggaggtacgggaggcg
gcgaggcagatgtacgaggcggcgaaggctgccggaagtgcggaggcctataaatacgcg
caggcttctaccagcatcaaccggcagatcgtggacgacgcgaaagtccttttgggctat
atgggcattccctttatagtggctccctccgagggcgaggctcaggccgcttacatggtc
tccaggggcgccgcggactacgtgggctcccaggattacgattccctcctgttcggagcg
ccccgggtcgtcaggaacatcgccatcacgggcaagcggaaggtgcccaggaaaaatatc
tacatggatgtcaagccggaggttatcgagcttcaggaagtgctcgccactctcggcctc
acccgtgaggaactgatcgacatggccatcctcgtcggcacggactataatcccggcatc
ttcaaggtcgggcccaagactgcccttaagctcgtgaaaaagcacggtgacaatatgccc
gcaatcctggatgagctgggccagaccatcgagaactgggaggccataaaagagttcttc
ctgcacccgacagtgaccgacgactatcaggtgaagtggggcaagcccgagccggcgaag
ataaaagagttcctgtgcgaggagcacagcttctcggtcgaccgggtcgacaaagtgctc
gaaaggctgactaccgctgtatcagagactacaaagcaaaagaccctgtcatcgtggttc
tga

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