Methanocella arvoryzae: RCIX685
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Entry
RCIX685 CDS
T00526
Symbol
cdc48-1
Name
(GenBank) putative cell division cycle protein 48
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
rci
Methanocella arvoryzae
Pathway
rci04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
rci00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
RCIX685 (cdc48-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rci03019
]
RCIX685 (cdc48-1)
03009 Ribosome biogenesis [BR:
rci03009
]
RCIX685 (cdc48-1)
04131 Membrane trafficking [BR:
rci04131
]
RCIX685 (cdc48-1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rci04147
]
RCIX685 (cdc48-1)
Messenger RNA biogenesis [BR:
rci03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
RCIX685 (cdc48-1)
Ribosome biogenesis [BR:
rci03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
RCIX685 (cdc48-1)
Membrane trafficking [BR:
rci04131
]
SNARE
SNARE associated proteins
Others
RCIX685 (cdc48-1)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
RCIX685 (cdc48-1)
Exosome [BR:
rci04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
RCIX685 (cdc48-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
CDC48_N
AAA_lid_3
CDC48_2
RuvB_N
AAA_2
AAA_16
TIP49
AAA_14
AAA_33
AAA_22
AAA_5
Vps4_C
AAA_28
Mg_chelatase
nSTAND3
AAA_17
RNA_helicase
IstB_IS21
AAA_7
AAA_3
ABC_tran
Sigma54_activat
NPHP3_N
Zeta_toxin
AAA_24
AAA_18
DUF815
Parvo_NS1
ATP-synt_ab
PhoH
KAP_NTPase
bpMoxR
Motif
Other DBs
NCBI-ProteinID:
CAJ36077
UniProt:
Q0W6B6
LinkDB
All DBs
Position
complement(2130905..2133733)
Genome browser
AA seq
942 aa
AA seq
DB search
MADKNEVTLRVQEAYHRDVGRGIARIDMETMRQLGMVSGDIIEIEGKGAIATAVVWPGYP
SEEGKGVILIDGNIRSNARVGIDDRVKVRKIQAKKAERITLAPTQPVRITGGEYYLLKLL
EGRPISKGQAIRVEMLGSPMTFVVTNTRPAGTVIADMSTEVTISEKPVEAEKAEKTPHIS
YEDIGGLRREIGLVREMIELPLRHPELFQKLGIEPPKGVLLFGPPGTGKTMIAKAVASET
DAHFINISGPEIMSKYYGESEKQLRDIFKEAEDNAPSIIFIDEIDSIAPKREEVTGEVER
RVVAQLLSLMDGLQSRGQVVVVAATNRPNAVDPALRRGGRFDREIEIGVPDKVGRLEILH
VHTRGMPLKTLNSVITRYLSTVLDVKDLSDIIERSRLNELLGKQQFIEELTEASTLRGDD
IPAVQKKLTNVLEHASDSAYKESGEAATVTELKRKLLDALFQVMTKKDEQQFAKDDVDYL
QKNIPLIERATKQKIRMEEVRESDLLNNPSFIKSVLKGLGAGSDSVDKMSIKELHLKLFE
ELDKIKQKENEKNKTNFVNLERLADTTYGFVGADIAALCKEAAMHALRMIMPSIDIEKEI
PQEVLDELQITGDDFTEALKNIEPSAMREVFVEVPDVHWSDVGGLDMVKQELRESVEWPL
KFKEVFSATNTTPPKGIMMFGPPGTGKTLLAKAVANESEANFISIKGPEILNKYVGESEK
AIRETFRKARQSAPTIIFFDEIDAIAPTRGAGFDSHVTERVVSQMLTELDGLEELHNVVV
IAATNRPDMVDTALLRPGRLDRLLYIPPPEEESRLQIYRIHTRGKPLDRDVDLEKIARDS
KDYVGADIEAVCREAAMLAIREHITHGMTPEQAKKEAGNIKIKMKHFEAALQKVRPTLSR
DMHQRYEKLTAEFARQVVGTGETAPKKEKKEEKKPAEIRTAS
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggctgacaaaaacgaagtcacgctaagagtgcaggaagcctaccacagagacgtcggc
cggggcatcgcccggatcgacatggaaaccatgagacagctgggcatggtcagcggagac
atcatcgagatcgaaggcaaaggcgccatcgcgactgctgtagtctggcctggctacccc
agcgaggaaggcaaaggagtcatactcatcgacggcaacatcaggtccaacgccagagtc
ggcatcgacgaccgggtcaaagtaaggaagatacaggctaagaaggcagagcgcatcacc
ctcgcgcccacccagccggtcaggatcacgggcggggaatactacctgctgaagcttctc
gaaggcaggccgatctccaagggtcaggccatccgggtggagatgctcggcagccccatg
actttcgtggtcaccaacacacgtccggctggcacggtcatcgcggacatgagcaccgag
gtgaccatcagcgagaagccggtcgaggcggaaaaggctgagaagacgccccacatctcc
tacgaggacatcggcggcctgcgcagggagatcgggctcgtcagggaaatgatcgagctg
ccgctgcgccaccccgagctgttccagaagctgggcatcgagccgcccaagggagtgctg
ctcttcggcccgccgggcaccggcaagacgatgatcgccaaggcggtcgccagcgagacc
gacgctcacttcatcaacatcagcggccccgagatcatgtccaaatactacggcgaatcg
gagaaacagctgagggacatcttcaaggaagccgaagacaacgcgccttccatcatcttc
atcgacgagatcgactcgatcgcgcccaagcgagaggaagtcacgggcgaagtggagcgc
agagtcgtcgcccagctcctgtccctgatggacgggctgcagagccggggccaggtggtc
gtggtagccgcgaccaacaggccgaacgctgtggaccccgcgctgagaagaggcggccgg
ttcgacagagagatcgagatcggcgtccccgataaggtaggcaggctcgaaatcctccac
gtgcacacgagaggcatgccactaaagaccctgaacagcgtgataaccaggtacctctcg
accgtgctggacgtgaaggacctgtcggacatcattgaaaggtccaggctgaacgaactc
ctcggaaagcagcagttcatagaggagctgacagaggcatcgaccctgcgcggcgatgac
ataccggcggttcagaagaagctcactaacgtgctggagcacgccagcgactccgcctat
aaggaaagcggggaggccgcgacggtcaccgagctgaagcggaagctcctggacgcgctg
ttccaggtgatgaccaaaaaggacgagcagcagttcgcgaaggatgacgtcgactacctc
cagaaaaatatacccctgatcgagagggcgacaaagcagaagatcaggatggaggaggtc
agagaaagcgacctgctcaacaacccgagcttcatcaaaagcgtcctcaaaggcctgggc
gcgggcagcgattccgtcgacaagatgagtatcaaggagctgcacctgaagctgttcgag
gaactggacaagatcaagcagaaggaaaacgagaagaacaagaccaacttcgtcaacctg
gagcggctggcagacactacctacggcttcgtaggcgctgacatcgccgccctctgtaaa
gaggcggccatgcacgccctccggatgattatgcccagcatcgacatcgagaaggagatc
ccgcaggaggtcctggatgagctgcagatcaccggcgacgacttcaccgaggcgctgaag
aacatcgagccttcggcgatgagggaggtcttcgtagaggtacctgacgtccactggagc
gacgtaggaggcctggacatggtcaagcaggagctgcgagagtcggtcgagtggccgctg
aagttcaaggaagttttcagcgccaccaacaccacgccccccaaaggtatcatgatgttc
ggcccgccgggcaccggcaagacgttgctggcgaaggccgtcgccaacgagtccgaggct
aacttcatcagcatcaagggcccggagatcctcaacaagtacgtgggcgagtcggagaag
gccatcagggagacgttccgcaaagcgagacagagcgccccgacgatcatcttcttcgac
gagatcgacgccattgccccgaccagaggcgccgggttcgactcccacgtgaccgagaga
gtcgtgagccagatgctgaccgagctggacggcctggaggagctacacaatgtagtagta
atagccgccaccaaccggccggacatggtcgacactgcgctgctgcgcccgggcaggctg
gacaggctgctctacatcccgcccccggaagaggagtcccgcctgcagatctacaggatc
cacaccagaggcaagcccctcgacagggacgtggacctggagaagatcgcccgggacagc
aaggactatgtgggcgcggacattgaagccgtatgccgggaggccgcgatgctggccatc
cgggagcacatcacccacggcatgactcccgaacaggcgaaaaaggaagctggcaacatc
aagatcaagatgaagcacttcgaggccgcgctgcaaaaggtcaggcccacgctatccagg
gacatgcaccagcggtacgaaaagctgaccgcagagttcgccaggcaggtcgtgggcacc
ggggaaacggccccaaagaaggaaaagaaagaggaaaaaaagccggcggagatcaggacc
gcatcctag
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