Methanocella arvoryzae: RRC430
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Entry
RRC430 CDS
T00526
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rci
Methanocella arvoryzae
Pathway
rci03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rci00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RRC430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rci03019
]
RRC430
03009 Ribosome biogenesis [BR:
rci03009
]
RRC430
Enzymes [BR:
rci01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RRC430
Messenger RNA biogenesis [BR:
rci03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RRC430
Ribosome biogenesis [BR:
rci03009
]
Prokaryotic type
rRNA helicases
RRC430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
AAA_19
Cas3-like_C_2
HEM4
DUF4422
Motif
Other DBs
NCBI-ProteinID:
CAJ38133
UniProt:
Q0W0G0
LinkDB
All DBs
Position
complement(139076..140431)
Genome browser
AA seq
451 aa
AA seq
DB search
MSSFENLKLSEPVMKALASMGFEESTHIQDSTIPLALKGKDVIGQAPTGTGKTAAFGIPM
IEICDNSPSIQAIVITPTRELAIQVSEELNKIGQFKGIRALPIYGGQEYKWQMKGLKEKP
QIIVATPGRLMDHLTKQKSIKGNDVKMLVLDEADEMLDMGFIDDIYAVMEKLPAERQTLL
FSATMSPEIKKIAVELMKKPHIVGQESKKVKSPAISQHYVEVHESGKFEALCRILDTQCP
DLAIVFVRTKVRVDELQEGLTRRGYAAVGLHGDMDQQRRNSIMKQFKNGKTQVLVATDVA
ARGLDISDVSHVFNFDIPRDPESYVHRIGRTGRAGKSGISITFVTFREIKLLKLIEQVSA
RRMERMEVPTLEEAIEEQQRKVIDSLREAAYGEDALRYRHLAEKLLNDNDSVTLVSAALT
MLIKEPDKTPVVLTEPKQGGKKKGGFRRPRK
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgagttcatttgaaaacttaaagctgagcgagccggtcatgaaggctctggccagcatg
ggcttcgaggagtccacccacattcaggatagcaccattccccttgcgctgaaaggcaag
gacgtcatagggcaggcacccacaggcaccggaaagaccgccgcgttcggcatcccgatg
atcgagatatgcgacaacagtcccagcattcaggcgatcgtcatcacgcccaccagagaa
ctcgccatacaggtatcggaagagctgaacaagatcggccagttcaaaggtatccgggcg
ctgcccatctacggcggccaggaatacaagtggcagatgaaaggcctgaaagaaaagcct
cagattatcgtggccaccccgggacggctaatggatcacctgaccaagcagaagagcatt
aagggtaacgacgtcaagatgctggtcctggacgaggcagacgagatgctggacatgggc
tttatcgatgacatctacgcggtcatggagaaactgccggccgaacgccagacgctgctc
ttctctgcaaccatgtcgcccgagatcaagaagatcgctgtcgagctgatgaagaaaccg
cacatcgtaggacaggaatcgaagaaggtgaaatccccggccatctcccagcattatgta
gaagtgcatgagagcggtaaattcgaagccctgtgcaggatcctcgatactcaatgcccc
gaccttgccatcgtgttcgtcaggaccaaggtcagagtagacgagctccaggaaggcctg
accaggcgaggatatgcggctgtcgggctgcatggcgacatggaccagcagagacgcaac
agcatcatgaagcagttcaagaatggcaagacacaggtgctcgtggctactgacgtggca
gccaggggtctggacatcagcgacgtcagccacgtgttcaacttcgacattccacgggac
ccggaaagctatgtccaccgcatcggcaggaccggcagggcaggaaagagcggtatatcg
atcaccttcgtgacgttcagggagatcaagctgcttaagcttatcgagcaggtttccgcc
agaaggatggagcggatggaagtgcccacactggaagaggcaatcgaagaacaacagcgg
aaggttatcgacagcctgagagaggccgcatacggggaggatgcactaaggtaccgtcac
ctcgccgaaaaactgctgaatgataacgactccgtcacactagtctctgctgcgcttacg
atgctcatcaaagagccggacaagacgcccgtcgtcctgaccgaaccaaagcagggcggc
aagaagaaaggcgggttcagaaggccgaggaagtaa
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