Riemerella columbina: NYR17_00160
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Entry
NYR17_00160 CDS
T09247
Name
(GenBank) 3'-5' exonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
rcl
Riemerella columbina
Pathway
rcl03030
DNA replication
rcl03430
Mismatch repair
rcl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rcl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NYR17_00160
03430 Mismatch repair
NYR17_00160
03440 Homologous recombination
NYR17_00160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rcl03032
]
NYR17_00160
03400 DNA repair and recombination proteins [BR:
rcl03400
]
NYR17_00160
Enzymes [BR:
rcl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NYR17_00160
DNA replication proteins [BR:
rcl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NYR17_00160
DNA repair and recombination proteins [BR:
rcl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NYR17_00160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
DEDDh_C
RNase_H_2
Rv2179c-like
DNA_pol_A_exo1
RRM_1
Peptidase_C10
Motif
Other DBs
NCBI-ProteinID:
WKS95188
LinkDB
All DBs
Position
36649..37854
Genome browser
AA seq
401 aa
AA seq
DB search
MYSIIDIESNGGAFREECIIEIAIYQFDGHQITDQFSSIINPEAKISFFVQKLTGITPKM
VKTAPKFHEVAKRVIEITQNTTLVGHNVEFDYRMLKQSFKRLGYDFEIETIDTLPLAKKL
IPDEASYSLGKLSKSLGFPIAEHHRAAGDARATLDLFKLLLTKDRAHEIIEAHHQERQAK
TYLNHTKVITEHLPARKGIIYFQNADGKVLFFRYVEDIYRFAKTVFNAHSPRWHKLQKAT
TQVSFELAPSDLLAHLMASTQGLSIKSAFNYGLYFQDEIWTVAKSTRNALVKFRTLSQAK
KALEYINQKQFNEGELKALISVKNQNLLLTGQGRTRGEKSFILLENGKITGYGFYDWFSQ
ISTYDKISKLKISVEHTTPAVYNELKLAFLRNEFKKQEIPA
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atgtattccattatagatatagagagtaatggtggtgcgtttcgggaggagtgcattata
gaaattgcgatctaccaatttgacgggcatcagattaccgaccagtttagctccatcatc
aaccctgaggctaaaatttctttttttgtacagaaattaacgggtattacgcctaaaatg
gtaaaaacagcgcctaaattccacgaagtggctaagcgcgtgatagagatcacacaaaac
accactttggtgggacacaatgtggaatttgattatcggatgctcaagcaatccttcaag
cggttaggctatgattttgagatagagaccatagacaccctccctttggcaaaaaaacta
attcctgatgaagccagttattcgctggggaagctctccaaatccttagggtttcctatt
gcggagcaccatagagccgccggcgatgccagagcaactttggatttatttaagctccta
ctgaccaaagatagagcccacgaaattatagaagcccaccaccaagagcggcaagccaaa
acttacctcaaccataccaaagtgattacggaacatctgcccgctcgcaagggaattatt
tattttcaaaatgcggatggcaaggtgcttttcttccgttatgtggaggatatttatcgg
tttgcgaagaccgttttcaacgcccattctccgcgttggcacaagctacaaaaggcgact
acgcaggtttcttttgagttggcaccttcggatttattagcgcatcttatggcttccaca
caaggtttgagtattaaaagtgctttcaattatgggctttatttccaagatgaaatatgg
acggttgccaagagtacgcgcaatgctttggtcaaatttcgcaccctttctcaggcgaaa
aaagctttggaatacatcaatcaaaagcaatttaacgagggtgagttgaaagcgctcatt
tcggttaaaaatcaaaatttactcctgacaggacaaggcagaacccgtggcgaaaagtcc
tttatattgctggaaaatgggaaaatcacaggctacggcttttacgattggttttcgcaa
atcagtacctatgataaaatttctaaacttaaaatctctgtagagcataccacgcctgcg
gtctataacgagctcaagttggcttttttaagaaatgagtttaaaaaacaagaaattccc
gcttag
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