Riemerella columbina: NYR17_00550
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Entry
NYR17_00550 CDS
T09247
Name
(GenBank) penicillin-binding transpeptidase domain-containing protein
KO
K05515
penicillin-binding protein 2 [EC:
3.4.16.4
]
Organism
rcl
Riemerella columbina
Pathway
rcl00550
Peptidoglycan biosynthesis
rcl01100
Metabolic pathways
rcl01501
beta-Lactam resistance
Brite
KEGG Orthology (KO) [BR:
rcl00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
NYR17_00550
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
NYR17_00550
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
rcl01011
]
NYR17_00550
Enzymes [BR:
rcl01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
NYR17_00550
Peptidoglycan biosynthesis and degradation proteins [BR:
rcl01011
]
Peptidoglycan biosynthesis and degradation
DD-Transpeptidase (Class B PBP)
NYR17_00550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transpeptidase
PBP_dimer
Motif
Other DBs
NCBI-ProteinID:
WKS95260
LinkDB
All DBs
Position
117227..119260
Genome browser
AA seq
677 aa
AA seq
DB search
MKPFYRIIAFLVLLAVIFVARLSYLQLFTDRYALNAANTSIKADYIIPQRGVIFDRNGKI
LVGNRPAYEISFTQALLKPDFDTLAFCNLVRISKADFIQRIKTIKADQYYSKMQPMTFMK
NLSREDMARIQEIIFKYPAFSIVKRPQREYEVGTSGNLLGFTNEVNQYDIKKDSTYYLPG
DIIGKSGIEKAYEKDLRGEKGVQYIQKDIKLRNVGPYKNGELDKEVVTGKDLTLTIDYDL
QKIAEEMLVNKRGAIVALDPKTGEILVLASGPDVDPSEAFTGSEKSKKIYALQTDQFNMP
MFDRSIQAAYPPGSTFKLVTALAAMQMGVMTPDTVFPCGGGFNYRGLRIKGHGGADPLVP
AIQVSSNCYFSYAYLAMVNKYPNDPSKGVDEWQKIMNSFGLGVFLNNDLAVGAKGKIPSG
KYYENRMAAIYKANGSKADPKKWDPLATGAVFNGMGQGDVMVTPLQLANFTAAIANKGWF
YTPHIVKSVDGKPNPDPRFKKKHYTLVQNKSYYDAVLKGMEAVVLRGTGRSLKTNDFTQL
AKTGTAQVPQGKDNSIYTMIAPAEDPKIVVAAVMEHAGFGATWAGPACTIIAEKYLTGEI
KREHLYKKMVNASFMPEYRRQWIADLKRKGLYKEPSKDSMALVKIQDSLRMNHLDKNTLN
RLKVKSDSLKLKLQNHE
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaccgttttatagaattatcgcgtttcttgtactccttgccgttatttttgtggcg
aggctttcttatttgcaactttttaccgaccgctatgcgctcaatgccgccaatacttct
ataaaagccgactacatcatcccgcagcggggcgtgatctttgatagaaatggcaaaatt
ctggtgggcaatagaccagcctacgaaatttcttttacccaagctctactcaaacccgat
tttgataccttggcattttgtaatttggtcagaatttccaaagctgattttatccaacgc
attaaaaccatcaaagctgaccaatattactccaaaatgcagcctatgacttttatgaaa
aacctctctcgggaggatatggcgcgcattcaggagattatttttaaataccccgctttc
agcattgttaaaaggccgcagcgcgagtacgaagtgggtacctctggaaacctcctcggc
tttaccaacgaggttaaccaatacgacataaaaaaagactctacctactaccttcctggc
gacatcattgggaaatctggcattgaaaaagcctacgagaaagacctccgtggcgagaaa
ggcgttcagtatattcagaaagacatcaaactcagaaatgtagggccttataaaaacgga
gagctggataaagaggtagtcacgggcaaagacctcacccttaccatcgattatgatttg
cagaaaatcgcagaggaaatgctcgtgaacaagcgcggcgccattgttgctttagaccct
aaaactggggaaattttagtcttggcatcaggtccagatgtagacccctccgaggcgttt
acaggcagcgagaaaagcaaaaaaatctacgccctacaaaccgatcagttcaatatgccg
atgtttgaccgctccatccaagccgcttatccaccaggttccaccttcaagttggttacc
gccttagccgcgatgcaaatgggcgtgatgacaccagataccgtatttccgtgcggtggt
ggcttcaactaccgaggtttgagaattaaaggtcacggcggtgcagatccgttggttcca
gccatacaggtgtccagcaattgctatttttcctatgcctacttggcgatggtcaacaaa
taccctaacgacccatccaaaggggtagatgaatggcaaaaaattatgaatagctttggg
ttgggggtattcctcaataatgatttggcagtgggtgccaagggtaaaatcccgagtggg
aaatattacgaaaaccgaatggcagccatctacaaagccaacggcagcaaagccgaccct
aaaaaatgggacccgctggctacaggtgccgtgttcaatggtatgggacaaggcgatgtg
atggtaacgccgcttcagttagctaatttcactgcggctattgccaacaaaggttggttc
tacacgcctcatatcgttaaatctgtggatggcaagcccaatccagatccgcgtttcaaa
aagaaacattatactttggttcaaaacaaaagctactatgacgccgtgcttaaaggtatg
gaagccgtagtactcagaggaacaggacgttccctaaaaaccaatgattttacccaattg
gcaaaaacaggaaccgcccaagtaccccaagggaaggacaactctatctacacgatgata
gcccctgcggaagacccaaaaattgtggtggctgccgtaatggaacacgctggatttggt
gccacatgggcaggacctgcctgcaccatcattgcagagaaatacctaacaggcgaaatc
aaacgcgagcatctttataaaaaaatggtcaatgccagctttatgcctgaataccgcaga
cagtggattgctgacttaaaacgaaaagggctctataaagaaccgagcaaagattctatg
gcgcttgtaaaaatccaagatagccttagaatgaaccatctggataaaaatacgctgaat
aggcttaaagtaaaaagtgattctctaaaactaaaacttcaaaaccatgaataa
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