Riemerella columbina: NYR17_02015
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Entry
NYR17_02015 CDS
T09247
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
rcl
Riemerella columbina
Pathway
rcl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rcl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NYR17_02015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rcl03021
]
NYR17_02015
03400 DNA repair and recombination proteins [BR:
rcl03400
]
NYR17_02015
Enzymes [BR:
rcl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NYR17_02015
Transcription machinery [BR:
rcl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NYR17_02015
DNA repair and recombination proteins [BR:
rcl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NYR17_02015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
WKS95537
LinkDB
All DBs
Position
424099..425094
Genome browser
AA seq
331 aa
AA seq
DB search
MAILNFIKPDKVILLNSTNFQGQFEFRPLEPGYGLTIGHALRRVLLSSLEGYAITSIKIE
GVEHEFSTIPGVIEDVTEIILNLKQLRLKAKAENQPAETVTAKLSNLQQITAGDLGKAIS
GFEVLNPDLVICNLAKDVNLEMTFSINKGRGYVPSEQNKSNNAPLGTIAIDSIYTPIKKV
KYSIENYRVEQKTDYEKLILDIETDGSISPQDALIEASKILIYHFMLFSDERITLETEAV
KASIQYDEETLHTRQLLKTKLSEMDLSVRALNCLKAAEVETLGELVSYSKSDLMKFRNFG
KKSLTELEELVHSKGLNFGFDVSKYKLDADK
NT seq
996 nt
NT seq
+upstream
nt +downstream
nt
atggcaattttaaattttataaaacccgataaagttatcctcctgaactctaccaacttc
caaggtcagtttgaatttagacctttagagccagggtacggattaaccatcggacacgct
ttgagaagagttttactcagctctctagaaggttatgctattacatcaataaaaatagaa
ggcgtagagcacgaattttccaccatcccaggcgttatagaagatgtaactgagattatc
cttaatctaaaacagttgcgtctaaaagcaaaagcagaaaaccagccagcagaaacagta
actgctaaactctctaacctccagcagattaccgcaggagacttagggaaggccatctct
ggttttgaagttctaaatcctgatttggtaatttgtaaccttgcaaaagatgtaaattta
gaaatgacttttagcatcaataaaggcagaggttatgttccatctgaacaaaataaatct
aacaacgctccactcggtactatcgcgatagactctatctacaccccaattaaaaaggtg
aagtacagcatagaaaactaccgtgtagagcaaaaaacggattacgaaaaactaatctta
gatattgaaacagacggttccatctctccacaagatgcactcatagaggcttctaaaata
ctgatctatcactttatgctattctcagatgaaagaattactctggaaactgaggccgta
aaagcatcgatccagtacgatgaagaaactctacacaccagacaattattgaaaactaaa
ctctcagaaatggacctctccgtaagagcccttaactgcctaaaagctgcagaagtagaa
accttaggcgagttagtttcttacagtaaatctgatctgatgaagtttagaaatttcggt
aaaaaatcattaacggagcttgaagaattagtacactctaaaggcctcaacttcggtttt
gatgtaagtaaatataagttggacgctgataaataa
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