Riemerella columbina: NYR17_02980
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Entry
NYR17_02980 CDS
T09247
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
rcl
Riemerella columbina
Brite
KEGG Orthology (KO) [BR:
rcl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rcl03009
]
NYR17_02980 (rlmD)
Enzymes [BR:
rcl01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
NYR17_02980 (rlmD)
Ribosome biogenesis [BR:
rcl03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
NYR17_02980 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRAM
Cons_hypoth95
Methyltransf_11
MTS
TRM5-TYW2_MTfase
Methyltransf_15
N6_N4_Mtase
RrnaAD
PCMT
UPF0020
Methyltransf_2
Methyltransf_12
Methyltransf_4
PrmA
2-ph_phosp
NpmA
Motif
Other DBs
NCBI-ProteinID:
WKS95720
LinkDB
All DBs
Position
complement(620901..622316)
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AA seq
471 aa
AA seq
DB search
MSKRRKNIILENIQLTTAGAKGVTIGKTEAGKTVLVSGAVPGDVVRARVKKSKKQYDEAE
VLDIIEPSKDRVAPVCIHFGVCGGCKWQNLSYSKQLEFKQNEVLNNLKRIGGIENFETLP
ILGSEEVYFYRNKMEFSFSNARWLTAEEIAEDQAITHKNALGFHIPGMWSKILDLKECYL
QEAPSNDIRLAVKQYADAHNLAFFDVKNQEGFLRTLMLRQNSKGEWMVLFQIYREETEHR
IALFDFLLQKFPQIKTLVYTINPKSNDSIYDLDIIPYYGDGFLVEEMDGLEFKIGPKSFF
QTNYQQALNLYRKTLEFADLKGDEVVYDLYTGTGTIAQFVARNAKQVIGIESVPEAIAAA
KEHAQHNGLHNCTFYCGDMKDIFTDEFLAQHPKADVLITDPPRDGMHAKVVEQILKLAPE
KIVYVSCNSATQARDLALMKHQYRVEKILPVDMFPQTHHIENIALLTKINS
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaacgaagaaaaaatatcatcttagaaaacatccaactgaccaccgcaggcgcc
aaaggcgtaaccatcgggaaaacagaagctgggaaaacggtgctcgtttctggagctgta
cctggtgatgtggttagagccagagttaaaaaatccaaaaaacaatatgatgaagccgaa
gttttagacattatagaaccttccaaagaccgtgtggcgcctgtgtgcatccactttggt
gtgtgcggtggctgcaagtggcaaaacctctcttacagcaaacagttagagtttaaacaa
aacgaagtactgaacaacttgaagagaattggcggaatagaaaattttgaaaccctgcct
attttaggctcagaggaggtttatttttaccgaaacaaaatggagttttcattctccaat
gcccgatggctcacggcagaagaaattgccgaagaccaagccattacccacaaaaatgcc
ttaggatttcatattcctgggatgtggagtaaaatccttgatcttaaagaatgctatctc
caagaagccccttctaacgacatcagattagcggtaaagcaatacgctgatgcccacaac
ttagccttttttgatgtgaaaaatcaagagggtttcctgcgaactttgatgctgcgccaa
aactcaaaaggcgaatggatggtactgttccaaatctacagagaggaaaccgagcataga
atagccttgtttgattttctcctccagaagttcccacagattaaaactttggtctatacc
atcaaccccaaatctaacgattctatttatgatttagacattatcccatattatggcgat
ggctttttggtggaagaaatggacggcttagagtttaaaatcgggcctaaatcatttttc
caaaccaactaccaacaggcgctcaatctgtataggaaaactttagaattcgctgattta
aaaggtgatgaagtggtgtacgacctctacacaggcacgggcaccattgcgcaatttgtt
gcgaggaatgccaagcaggtaattgggatagagtctgtgccagaggccattgctgccgcc
aaagagcacgcccaacataacgggctccacaactgcactttctattgtggcgatatgaag
gatatttttaccgatgaattccttgctcagcatcctaaagcggatgtcctcatcaccgac
ccgcctcgcgatggtatgcacgccaaagtggtggagcaaattttaaaattagcaccagag
aaaattgtttatgtgagctgcaactccgccacccaagcgcgagatttagctctgatgaaa
catcaataccgcgtggagaaaatccttcctgtggatatgttcccacaaacgcatcatatt
gaaaatattgcactcctcaccaaaatcaattcttaa
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