Riemerella columbina: NYR17_03005
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Entry
NYR17_03005 CDS
T09247
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rcl
Riemerella columbina
Pathway
rcl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rcl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NYR17_03005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcl03019
]
NYR17_03005
03400 DNA repair and recombination proteins [BR:
rcl03400
]
NYR17_03005
Enzymes [BR:
rcl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NYR17_03005
Messenger RNA biogenesis [BR:
rcl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NYR17_03005
DNA repair and recombination proteins [BR:
rcl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NYR17_03005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Cas3-like_C_2
HTH_20
CdsD_PD2
HTH_IclR
zf-CXXC
DUF6583
TrmB
Motif
Other DBs
NCBI-ProteinID:
WKS95724
LinkDB
All DBs
Position
628712..630616
Genome browser
AA seq
634 aa
AA seq
DB search
MPYTRQQISTLIEDTLAHFWGYSTFRDAQKDIIFSILNHRDTLALLPTGGGKSLCYQLPA
LVLEGTCLVVSPLLALMKDQVGQLKQRGIEAEYLSSELEEDEAETIYARCIEGITKILFV
SPERLKNMVFLSKVEEMQISFLAVDEAHCISEWGQDFRPSYQNIEAFRKDKLSGQPVLAL
TATATPKVVEDIKTKLGLQSPQIFQKSFKRDNISIYTEATVDKYARVFHLLKNNPATGII
YTATRKQAEQLSEYLNHSGLSQVDYYHAGLSLQDKNRKQAEWLTLPNRVLVATNAFGMGI
DKEDVRFVIHFSPPTSLENYYQEIGRAGRDGQPSFAVLLWSEDEISRFDGVLYQQIPSRD
FFKKAVSYLYSLFQIADYEQAEGTFQFNIQSWQRVTRAPLPMLNNILTFLHNQEIIYYNA
RQSKSSVELTIEVSDFELLPKSDAYFIETLLRNLSGFSTHKVYFREEALAQKLHMPAAQL
KEHLQSLKKRGFVHYIDGGAGSIKFLIPRDEQSFGGKWWHLFFEIQRNKVQKWEEMKYFI
QNRDRCKMQLILSYFGEATAQNCGHCSVCLNRQYQQEEVQHPALLLLAERPQTLLELAAA
LPQIDSPQLLRDLIKLLNEGKIKMLNYKTYTLNP
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgccctatacgcgacagcaaatatcaacccttattgaggatactttagctcatttttgg
ggttatagcaccttccgcgatgcccagaaagacattattttctccattttaaaccaccga
gacaccttggcgctactcccaacaggaggaggcaagtcgctttgttatcaactgcccgct
ttggtattagagggcacctgtctggtggtctcgccgctattggcgctgatgaaagaccaa
gtgggacagctcaaacaaagaggcatagaagccgaatacctcagttccgaattagaggaa
gacgaagccgaaaccatctatgcccgttgcatagaggggattaccaaaatcttatttgtt
tctccagagcgactgaagaatatggtgttcctcagtaaagtggaggagatgcaaatctcc
tttttagccgtagatgaggcgcactgtatctcagaatgggggcaagacttccgcccgagt
tatcagaatatagaagcatttaggaaagacaagttgagcggtcagcccgtgctggcgctc
accgctacagccacgcccaaggtggtggaagacatcaaaaccaagttagggctacagagc
ccccagatcttccagaagagttttaagcgagacaacatcagcatttatacagaagccacg
gtggataaatacgctcgggtcttccatttactcaaaaataaccctgccacgggcatcatc
tacaccgctacgaggaagcaagcagagcaactctccgaataccttaatcacagcggcttg
tcgcaggtagattactaccacgcagggctctcgctgcaggataagaaccgaaaacaagcc
gaatggctcaccctccccaaccgtgtgctggtggcaaccaatgcttttggtatggggata
gataaggaggatgtgcgttttgtgatccacttctcgccgcccacctctcttgagaattat
taccaagaaatagggcgcgcagggcgagatggacagccttcttttgcggtattgctttgg
tcggaagatgaaatatcaaggtttgatggggtattgtaccaacagattcccagccgagac
ttctttaaaaaagccgtgtcttatctgtattctttattccaaattgcggactatgaacag
gcagaaggcacctttcagttcaacattcaaagttggcagagggttacccgtgcaccattg
ccgatgctcaataacatcttgaccttcctccacaaccaagagattatttattataatgcg
cgccagtccaaatcctctgtggagctgaccattgaggtctcagattttgaactcctaccc
aagagcgatgcctattttatagaaactttgcttcggaatttatccggtttctccacccac
aaggtgtatttccgtgaggaggcattagcccaaaaactccatatgcctgcggcacaactt
aaagaacatctgcagagtttaaagaagagaggatttgtccattatatagatggcggagcg
gggagcattaagtttttaatccctcgcgatgaacagagctttgggggcaagtggtggcat
ctgttctttgaaatccaaaggaacaaagtccagaagtgggaagagatgaaatacttcatc
caaaaccgagaccgctgcaagatgcaactcattttatcctactttggcgaagccactgca
caaaattgcggtcattgttccgtatgtctcaaccgccagtaccagcaagaggaagttcag
caccctgcattgctccttttggcggagcgcccgcagactttattagagttagccgctgcc
ctgccgcagatcgatagcccccagctgttgagagacctgatcaaactccttaacgaagga
aaaataaaaatgttaaactataaaacctacacactcaacccatga
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